Mannheimia pernigra ZY170218: GM695_06235
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Entry
GM695_06235 CDS
T06423
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mann
Mannheimia pernigra ZY170218
Pathway
mann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM695_06235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mann03019
]
GM695_06235
03009 Ribosome biogenesis [BR:
mann03009
]
GM695_06235
Enzymes [BR:
mann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GM695_06235
Messenger RNA biogenesis [BR:
mann03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GM695_06235
Ribosome biogenesis [BR:
mann03009
]
Prokaryotic type
rRNA helicases
GM695_06235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Septin
DRTGG
tRNA-synt_1b
Motif
Other DBs
NCBI-ProteinID:
QHB17660
LinkDB
All DBs
Position
complement(1259537..1261342)
Genome browser
AA seq
601 aa
AA seq
DB search
MTTESLTFADLGLPQPILDAVNDMGFINPSPIQQECIPHLLTGRDVLGMAQTGSGKTAAF
SLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFSKNMKGVRIVTVYGGQRYDIQLR
ALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPEK
HQTALFSATMPEPIRRITRRFMNEPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLEKLRSGRLDILV
ATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI
ENLIKKPINEVPLPNHETLMEKRREKFKARISKQLEHHDLEKYRELLEDLFTADQDHEEL
AAAMMMLLQEKQKLILPPDPVIRAARSENGRGRDRNDRNDRRNGREERQGTNVAMDLYRI
ELGREDGVEVRHIVGAIANEGDISSRYIGHIKLYDTYSTIELPQSMPNQLVQHFTHKARV
LSKPMQMSLLGPANSASNSNPDRRSRDDRRERGPRRDSGFNKDRKGGFKEKRFNEKQARR
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgaatctttaactttcgccgacttaggcttacctcaacctattcttgatgct
gtaaatgatatgggatttataaacccatcgcctattcaacaagaatgtattcctcattta
ttaactggtcgtgatgtgcttggtatggctcaaacaggtagcgggaaaacagccgcattc
tctttacctttacttgcacaaatagatccaactcaacgccatccacaaatgctagtaatg
gcaccaacccgtgagcttgctatccaagtcgctgatgcttgtgaacaattttccaaaaat
atgaaaggtgttcgtattgtaactgtctatggtgggcaacgctatgacattcaacttcgt
gccttaaaacaaggctcacaagtcgttgtgggtacaccaggtcgtattcttgaccatatc
cgtcgtggtactttagatttatctgaattaaaatttatcgtgttagatgaagctgatgaa
atgctccgaatgggctttattgacgatgttgaaaccgttatggctgagttaccagaaaaa
catcaaactgcattattctctgccacaatgcccgaaccaattcgtcgcattactcgtcgc
tttatgaatgagccacaagaagtaaaaattaaggctacagaacgctctgcaccagatatt
gagcaaagctattggttagtaaacggcttccgtaaaaatgatgcgttattacgtttctta
gaggtagaagagtttgatgctgctatcatctttactcgcaccaaaacaggtacaattgat
attacagaattatgtgaacgtaatggctatcgcaccgctgcattaaatggtgatatgacc
caacaagctcgtgaacaaacgttagaaaagcttcgttcaggtcgcttagatattttagtc
gcaacagatgttgcagctcgtggtattgatattgagcgtatcagccttgtaataaactat
gatattccacttgaagaagaatcttatgttcaccgtattggtcgtactggccgtgctggt
cgctctggtcgtgcattattatttgttgagcctcgcgaacgtcgcttactacgcaatatt
gaaaatttaatcaaaaagccaattaatgaagtgccgctcccaaatcacgaaacattgatg
gaaaaacgtcgtgagaaattcaaagcccgaatttctaagcaactagaacatcatgattta
gaaaagtatcgtgaactactagaagatttattcactgcagatcaagatcacgaagaatta
gctgcagcaatgatgatgctattgcaagaaaaacaaaaattaatccttcctcctgatcct
gttattcgggcagcgcgttcagaaaatgggcgtgggcgcgatcgcaatgacagaaatgac
cgtagaaatggtcgtgaagagcgtcaaggcacaaatgttgccatggatttatatcgtatc
gagcttggtcgtgaagatggtgtggaagtgcgtcatattgttggtgcaattgcaaatgaa
ggggatatcagtagtcgttatattggtcatatcaaattatacgatacctactctaccatt
gaattaccacaaagtatgccaaaccagttggtacaacactttacacataaagccagagtg
ttaagtaaaccaatgcaaatgagcctattagggcccgcgaacagtgcaagtaatagcaat
cctgaccgacgtagcagagatgatcgccgtgagcgaggtcctcgccgtgatagtggcttt
aataaggatagaaaaggcggttttaaagaaaagcgttttaatgaaaaacaagctcgccgt
gactaa
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