Mannheimia pernigra ZY170218: GM695_09225
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Entry
GM695_09225 CDS
T06423
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mann
Mannheimia pernigra ZY170218
Brite
KEGG Orthology (KO) [BR:
mann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mann03019
]
GM695_09225 (hrpA)
Enzymes [BR:
mann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GM695_09225 (hrpA)
Messenger RNA biogenesis [BR:
mann03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GM695_09225 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
ABC_tran
SLFN-g3_helicase
AAA_23
NACHT
T2SSE
SRP54
HA2_N
AAA_30
AAA_24
PhoH
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
QHB18188
LinkDB
All DBs
Position
1857355..1861317
Genome browser
AA seq
1320 aa
AA seq
DB search
MKEKSPQNTHKQPLIKLENITTTDFRRLLSRLKGAENIKKEAHKRSVLDEILQDLNACQA
RFLSRQAHSRNLKIDYPDLPVSARREEILTLIRENQVVVIAGETGSGKTTQLPKMCLELG
RGVKGLIGHTQPRRIAARSVATRIAEELKSELGNTVGYKVRFNDQVNEHSLVKLMTDGIL
LAEIQHDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFS
KHFNNAPIIEVSGRTFPVEVRYRPIVEEKEQDQLQGILNAVDELQAEGRGDILIFMNGER
EIRDTTEALQKQELRHTEILPLYARLSVAEQQRIFQPSGGLNRIILATNVAETSLTIPNI
KYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFNSR
PQFTDPEILRTNLASVILQMTSLGLSDIASFPFVDAPDSRQIQDGIRLLEELQAIRLRHK
NDRANLNAGPKSKNTKEKDRINKSNWILTPIGRQLAQLPVDPRLGRMIVEATKNGSLHEV
MMIVSALSIQDPRERPQEKQQSADDKHRRFADKESDFLAFVNLWHFIQSQQKELSKNQFR
HLCRKDYLNYNRVREWQDIYHQLRLAVREMGLKINSEPATYQPIHTALLTGLLSHIGVKD
NEKIHYLGARNAHFFLFPNSVLFKKQPKWVMAAELVETTKLWGRMVARIEPEWIEPLAVH
LTKSSYSEPHWVKSKGAVMASEKVSLFGIPIVASRPINYGLVDPSVSREIFIRSALVEGE
WHNNYKFFKENNRLIREVEAMEHKSRRRDILVDEQVLFEFYDQRVGTEVVSAKHFDSWWK
KVAKNDPDLLNFEKSFLINDNANQVSELDFPNFWHQKALKLKLSYQFEVGKDDDGVTVHI
PLPLLNQVEPEGFDWQIPGLRHELVVSLIKSLPKSLRRNFVPAPNYAEAFLGRVEPFKKP
LLESLSVELRKMTGVFVEPEQWDISQLPPHLRITFRVIDGKGKKLQESENLDELKFDLKD
EVQNTLSNIADDGIEQSGLHIWNFAELPQFYEQKKAHFSVKAYPAIVDEQTAVGVKLFET
EFEQARAMRAGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFAPFGKVMELIDDCIACAVD
KLIEDFGGFVWNEEKFNALKEYVRANLNTTTVDIAKQVEKCLTLAYELHKRLKGKLDFTM
AFALSDIKSQINGLIYPEFVTQTGYQRLNDLHRYLTAIERRLDKLVIDSNADRAKMLRIE
QVQEAYKQLLNKLPKSKAIPDEVLEIRYMIEELRVSLFAQQLGTKYPISDKRILNLIKEL
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaatcaccccaaaacacacataaacaaccgcttataaaattagaaaatatc
acaacaaccgattttagacgtctgcttagtcggttaaaaggtgctgaaaatattaaaaaa
gaagcacacaagcggtctgttttagatgaaatattgcaagatttaaatgcctgtcaagct
cgctttctctctcgccaagcacattctagaaacctcaaaatagattaccctgatttaccc
gtttccgctcgccgtgaggaaattttaacactaatccgtgaaaatcaggtagtggttatt
gctggagaaacaggctcgggcaaaacgactcaattgcctaaaatgtgcttagaacttggg
cgtggcgtgaaaggattaattgggcatactcaaccacgccgaattgcagctcgctcggta
gccactcgcatagccgaagagctaaaatcagaactgggtaatactgtcggctacaaagtc
cgttttaacgatcaagtaaatgaacatagtttagtcaaactgatgacagatgggatttta
cttgctgaaattcagcacgacagatatcttaaccaatatgacacgttaattattgacgaa
gcccacgagcggagcctaaacaacgattttatcttaggttatttgaagcaaattctgcat
aaacgccccgatctgaaagtaatcatcacctcggcaaccattgatgtagaacgcttctct
aagcattttaataatgctccaattattgaagtttctggacgaactttcccagtggaggtg
cgttatcgtccgattgtagaggaaaaggagcaagaccagctgcaagggattttaaatgcc
gttgatgaattgcaagccgaaggacgtggcgatattctgatttttatgaacggagaacgg
gaaattcgtgatactactgaagcgttacaaaagcaggaacttcgtcataccgagatcctg
ccactttatgcccgactgtctgtggccgaacagcaacggattttccagccaagcggtggt
ttaaatcggattattttagcgaccaatgttgcggaaacctcgctcacaatccccaatata
aaatatgtgatcgatacgggtactgctcgcatctcacggtatagttacagaaccaaagtg
caacgactacccattgagccaatttcccaagcctccgccaaccaacggaaagggcgttgc
gggcgggtttctgagggaatttgtatccgcctctattctgaggaagattttaacagccgc
ccacaatttactgatcccgaaattttgcgaactaaccttgcttcggttattttacaaatg
acttcacttgggctaagtgatattgcctcattcccttttgtagatgctcccgatagtcgc
caaattcaagatggaattcggttgttagaggaattgcaggcgattagattacgccataaa
aatgatagagcaaacctcaacgcaggtccaaaatctaaaaatacgaaagaaaaggatcgc
atcaacaaatcaaattggattttaacgcctattggtcgccaactcgctcaactgcctgtt
gacccccgcttaggtagaatgattgttgaggcaacaaaaaatggatcgttacacgaagta
atgatgattgtctcggctctgtcaattcaagatccccgtgagcgtccacaggaaaaacag
caatcggcagacgataaacatcgccgttttgccgataaagagagcgatttcttagcattt
gtgaacctatggcattttatccaaagccagcaaaaagagctgtcgaaaaaccaatttcgc
catctctgccgtaaggattaccttaactataaccgtgtgcgagagtggcaggatatttat
catcaactacgccttgccgtgcgtgaaatggggctaaaaattaactcagagcctgctact
tatcaaccgattcatactgcacttttaacgggtttattgtcgcatatcggcgtgaaagat
aacgaaaaaatacactatttaggggcaagaaatgcacacttcttcctatttccgaactca
gtactctttaaaaaacagccaaaatgggtgatggcagctgagctggtagaaaccactaaa
ctctgggggagaatggtcgctcgaattgagccagaatggattgagccactcgccgtgcat
ttaacgaaatcaagttatagcgaacctcattgggtaaaatccaaaggggcggtaatggca
tcagaaaaagtctcactattcggcattccaattgtagcaagtcgccctatcaattacggt
ttagtggatcctagcgttagccgtgaaatttttatccgctcagcactggttgagggcgaa
tggcacaacaattacaaatttttcaaagaaaataaccgcttgatccgtgaagtagaagca
atggaacacaaatctcgccgccgtgatattttagtggacgaacaagttctgtttgaattt
tacgatcaacgagtgggtacagaggtggtttcggctaaacactttgattcgtggtggaaa
aaagtcgccaaaaacgatcctgatctgctcaattttgaaaaatccttcctgattaacgac
aatgcgaaccaagtaagcgagctggatttcccgaatttctggcatcaaaaggcattaaaa
ctcaagctgagctatcaatttgaagttggcaaagatgacgatggcgtgacggtgcatatt
ccgctaccactgctcaaccaagtcgagcctgagggcttcgactggcaaatcccggggctc
cgccacgaattagtcgtctctctaatcaagagcttacccaaatcactaagacgaaatttt
gtgcctgcaccaaactatgctgaggcttttctaggtcgagttgagccatttaaaaagcca
ttattggaaagtctaagtgttgagcttcgcaaaatgacaggcgtattcgttgagcctgaa
cagtgggatattagccaattaccaccacatttgcggataacatttcgtgtaattgatggc
aaaggcaaaaagttgcaagagagcgaaaatttagatgagctgaaatttgacctcaaagat
gaggtgcaaaataccctttctaacattgctgatgatggcattgaacaaagcggtttacat
atctggaattttgctgaacttccacaattctacgagcagaaaaaagcgcatttcagtgtt
aaagcctaccctgcaattgttgatgagcaaacggcggttggcgtgaagctatttgaaacg
gagtttgaacaagcacgggcaatgcgggcaggtttacgccgtctgctgttgttgaatgtg
ccatcgccgattaaatatctgcacgaaaaactgccgaataaagccaaactcggtttatat
ttcgccccatttggtaaagtgatggagctgattgacgactgtatcgcctgtgcggtagat
aagttgattgaggattttggtggatttgtctggaacgaagagaaatttaacgccctaaaa
gaatatgtgcgagctaacctcaacaccaccacagtcgatattgcaaaacaggtcgagaaa
tgcttaacactagcctatgagctacataaacgcttaaaaggcaaacttgatttcacgatg
gcatttgcattaagtgatattaaatcacaaattaatgggctaatttaccctgaatttgtc
acccaaactggctatcaacggctaaacgatctacaccgctatttgactgcaattgaacgc
cgtttagacaagcttgtgatagatagcaacgcagacagagccaaaatgctgcgaatcgaa
caggtacaagaagcctataaacagctgttaaacaagttaccaaaatctaaggcgattcca
gatgaagtgctggaaatccgttatatgattgaagaattaagagtcagcttatttgctcaa
cagctaggtacaaagtaccccatttcggataaacggattttaaatttaatcaaagagctt
taa
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