Mirounga angustirostris (Northern elephant seal): 123837549
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Entry
123837549 CDS
T11530
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mano Mirounga angustirostris (Northern elephant seal)
Pathway
mano03013
Nucleocytoplasmic transport
mano03015
mRNA surveillance pathway
mano03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mano00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123837549
09122 Translation
03013 Nucleocytoplasmic transport
123837549
03015 mRNA surveillance pathway
123837549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mano03019
]
123837549
03041 Spliceosome [BR:
mano03041
]
123837549
Enzymes [BR:
mano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123837549
Messenger RNA biogenesis [BR:
mano03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123837549
Spliceosome [BR:
mano03041
]
Complex C
Other components
EJC/TREX
123837549
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123837549
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
V-ATPase_G
ResIII
CMS1
Cas3-like_C_2
Zein-binding
Motif
Other DBs
NCBI-GeneID:
123837549
NCBI-ProteinID:
XP_045722489
LinkDB
All DBs
Position
Unknown
AA seq
565 aa
AA seq
DB search
MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREQEFQSKQQ
AAFFKGNPSAHGTIESGRIFFRSLAPARWQARRRESRVRGKPRTGSEGRVPPSSLLPPPY
ALALLGDPSPSPPAGPVMAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIH
SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT
LQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK
NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQ
VMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLD
VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA
TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV
QDRFEVNISELPDEIDISSYIEQTR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcagtcccagggtatccagcagctcctgcaagctgagaagcgggcggctgag
aaggtggcagatgccagaaagaggaaggcccggcgtctgaagcaggcaaaggaggaggca
caaatggaggtggaacagtaccgtagagagcgagagcaggaattccagagcaagcagcag
gcggcattttttaaaggcaaccccagcgcgcacggaactattgagtctggaaggatcttc
ttccggtctcttgcgcctgcgcgctggcaggcgagaaggcgggagtcccgggtaagaggg
aagccgagaaccggaagtgaaggcagagtccctccttcgtcgctgttgccgccgccatat
gcgctcgccttgctcggagacccctccccttctccccctgccggcccagttatggcagag
aatgatgtggacaatgagctcttggactatgaagaagatgaggtggagacagcagctggg
ggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtctccatccac
agctctggctttcgtgacttcctgctgaagccagagttgctccgggccattgttgactgt
ggctttgagcatccatcagaagtccagcatgagtgcatccctcaggccattctgggaatg
gatgtcctatgccaggccaagtcaggcatggggaagacagcagtgtttgtgctggccaca
ctgcaacagctggagccagttactggacaggtgtctgtgctggtgatgtgtcacactcgg
gagttggcttttcagatcagcaaggagtatgagcgcttctctaaatacatgcccaatgtc
aaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtgctgaagaag
aactgcccgcatattgttgtggggacccctggccgcatcctcgccctggctcgaaataag
agcctcaatctcaaacacattaaacactttatcttggatgaatgtgataagatgcttgaa
cagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccatgagaagcag
gtcatgatgttcagtgctaccttgagcaaagagatccgtcccgtctgccgcaagttcatg
caagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcatgggttgcag
cagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgaccttctcgat
gtccttgagttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgcattgccttg
gcccagctcctagtggagcagaacttcccagccattgccatccaccgagggatgccccag
gaggagaggctttctcggtatcagcaatttaaagattttcaacgacgaattcttgtggct
accaacctatttggccgaggcatggatattgagcgggtgaacattgccttcaactatgac
atgcctgaggattccgacacctacctgcatcgggtggcccgagcaggtcggtttggcacc
aagggcttggccatcacgtttgtgtcggatgaaaatgatgccaagatcctcaatgacgtg
caggatcgctttgaagtcaatattagtgagctgcctgatgagatagacatttcctcctac
attgaacagacgcggtag
DBGET
integrated database retrieval system
