Mirounga angustirostris (Northern elephant seal): 123837585
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Entry
123837585 CDS
T11530
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mano Mirounga angustirostris (Northern elephant seal)
Pathway
mano03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mano00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123837585 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mano03019
]
123837585 (SKIC2)
Enzymes [BR:
mano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123837585 (SKIC2)
Messenger RNA biogenesis [BR:
mano03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
123837585 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
123837585 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
123837585
NCBI-ProteinID:
XP_045722569
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MVETERLVLPPPDPLDLPLRPVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLRQEAEQ
LFLSSPAWLPLHGVEHSTRKWQRKMDPWSLLGTQGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTIIDLSTREEAEEEIDFE
QDLLTVPPGFKKGVDFAPKDHPAPAPSLLSLSRLLEPLDLGGGDEDESEAVGQPGIPRGD
TVSTSPCSASLARASSLEDLVLKEASTAVSPPEPPKPLPQEQWAIPVDVTSPVGDFYRLI
PQLAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGALEEPDTTGQLVDLPEYYSWGEELTETRSLIQRRIMESVNGLKSLS
AGRVVVVKNQEYHNTLGVILQVSSNSTNRVFTTLVLCDKPVCEDPQERAPATPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRVNGEKILEDFSKRLQPKFKKDPPIAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIWGAQCVHSPRF
SAQYLKLQERMRIQKEMERLRFLLSDQSLLLLPEYHQRAEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGEQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggtggagaccgagcgactcgtgctgcctcctccagatcccctggatctgccccttcgg
ccggtggagctgggatgcacagggcgctgggagctgctgaatgtgcctggggctccagag
agcacccttccccacggcctccctccctgtgccccagatctgcggcaggaagcagagcag
ttgtttttgtcatctccagcctggttgcctctgcatggtgtggagcactccacccgaaaa
tggcagaggaaaatggatccctggtctctcctgggcacacagggggccccagtgccctcc
gaccttcaggcccaaagacacccaaccacaggccagattctgggctacaaagaggtcctg
ctggagaatacaaacctatcggctaccacctccttgtctcttcgccggcccccagggccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccaccataatagatctgagcactcgggaggaggctgaggaggagatagactttgag
caagatcttcttactgttccacctggcttcaagaaaggtgtggactttgcaccaaaggat
cacccagctccagctcccagcttgctgagcctcagtcgtttgttggagcctctggatttg
ggtgggggagatgaggatgagagtgaggcagtgggacagccaggaattcccagaggggac
actgtttctacctccccttgcagtgcttccctggcccgagcaagcagcttggaggaccta
gtgttgaaggaagcatccacagctgtatcccctccagagccccccaaacccctgcctcag
gagcagtgggcgattcctgtggatgtcacctcccctgttggtgatttctaccgcctcatt
ccccagctggccttccagtgggcatttgagccagatgtgttccagaagcaggccatcctg
cacttggagcggcacgattctgtcttcgttgcggctcatacatctgcggggaagacggtt
gtggctgaatacgccattgcccttgcccagaaacacatgacgcgcaccatttacacgtcg
cccatcaaggccctgagcaaccagaagttccgagactttcgaaacacattcggggatgtg
ggattgctcactggggatgtacagctgcacccagaggcctcctgtctcattatgaccaca
gagatccttcgctccatgctgtacagtggctcagatgtcatccgggacctggagtgggtc
atctttgatgaggttcactacatcaatgatgctgagcgtggggttgtgtgggaggaggtg
ctcatcatgctccctgaccacgtctccatcatccttctgagtgctactgtccccaacgcc
ctcgagttcgccgactggatcgggcgactcaaacgtcgccagatctatgtgatcagcact
gttgcgcgccctgttcccttggagcattatctcttcacggggaacagccccaagacccag
ggggagctctttctgttgctggactcccgaggcgccttccacacaaaggggtactatgca
gctgtggaggccaagaaggagcggatgagcaaacatgcccagacctttggggccaaacag
cccacgcatcagggggggcctgcacaggatcgcggtgtgtacctatccctcctggcctcc
ctccgcacccgtgcacagctgcccgtggtggtgttcaccttctcccggggtcgctgtgat
gagcaagcctcgggcctcacctcccttgacctcaccacaagttcagagaagagtgagatt
cacctcttcctacagcgctgccttgctcgcctccgtggctctgaccgccagctgccccag
gtcctacacatgtccgagcttctgcaccgtggcctgggtgtgcaccacagtggcatcctg
cctattcttaaagagatcgtggagatgctctttagtcgaggcctggtcaaggtcttgttt
gccacagagacctttgccatgggtgtaaacatgcctgcccgaacggtggtgtttgactcc
atgcggaagcacgatggctccaccttccgggacctgctccctggagagtacgtgcagatg
gcaggccgggcaggccggaggggcctggaccccacaggcactgtcatcctgctctgcaag
ggccgtgtgcctgagatggcagacctgcaccgcatgatgatggggaagccgtcacagctg
cagtcccagttccgactcacgtacaccatgatcctgaacctgctgcgggtggatgccctt
agggtggaggacatgatgaagaggagcttctccgagtttccatcccgcaaggacagtaag
gcccatgaacaggctttagctgaactgaccaagagactgggggccttggaggaacctgac
acgactggccaactggttgacctgcctgagtattacagctggggggaggaactgacagag
accaggagcctgatccagcgacgcatcatggagtctgtgaatgggctcaagtctctctca
gcgggaagggtagtggttgtgaagaatcaggagtatcacaacacattgggtgtgatcctg
caggtctcctcaaactccaccaacagggtatttaccaccctagtcttgtgtgataagcct
gtgtgtgaggacccacaggagagggcaccagccaccccagatgtgccctaccccgatgat
cttgtgggattcaagctgttcctgcctgaagggccctgtgaccacacagtggccaagctc
cagccaggagatgtggccgccatcaccaccaaggtgctccgggtgaatggggaaaagatc
ttggaggacttcagcaagaggctgcaaccaaaattcaagaaggatcctcccattgcagcc
gtgaccactgctgtgcaggaactgctgcgtctggctcaggcctatccagcgggaccccct
acccttgaccctgtcaatgacctgcagctcaaggatgtgtcagtggtagagggggggctc
cgggcccgcaagctggaggagctgatctggggggctcagtgtgtgcacagcccccgcttc
tctgcccagtacctgaaactgcaggagcgaatgcggatacagaaggagatggagcgacta
cgcttcctgctgtcggatcagtcactgctgctgctcccagagtaccaccagcgagcagag
gtgctccgaaccctgggttatgtagacgaggcaggcactgtgaagctggcggggcgggtg
gcttgtgccatgagcagccatgagctcctcctcactgagctcatgttcgacaacgctctg
agtgccctgcggccagaggagattgcggccctactctccggcctggtctgccagagccct
ggggaccccggggagcagctcccaagcaccctcaaacagggagtggaacgtgtccgggct
gtggccaagcggattggtgaggtccaggtggcctgtggcctgaaccagacagtggaggaa
tttgtgggggagctgaattttgggctggtcgaggttgtgtacgagtgggcccggggcatg
cccttctctgaactggcggggctgtcagggacccctgagggcctggtggtccgctgcatc
cagcgcctggccgagatgtgtcgctcgctgaggggggcagcccgcctcgtaggcgagcct
gtgctaggtgccaagatggagacggcagctaccttgctacggagggacattgtctttgcg
gccagcctgtacactcagtga
DBGET
integrated database retrieval system
