Mirounga angustirostris (Northern elephant seal): 123848080
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Entry
123848080 CDS
T11530
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
mano Mirounga angustirostris (Northern elephant seal)
Pathway
mano00100
Steroid biosynthesis
mano01100
Metabolic pathways
Module
mano_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
mano00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
123848080 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
mano01006
]
123848080 (FDFT1)
Enzymes [BR:
mano01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
123848080 (FDFT1)
Prenyltransferases [BR:
mano01006
]
Terpene biosynthesis
Squalene/phytoene synthase
123848080 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
Motif
Other DBs
NCBI-GeneID:
123848080
NCBI-ProteinID:
XP_045736068
LinkDB
All DBs
Position
Unknown
AA seq
487 aa
AA seq
DB search
MEEKLYAGPATPMAVAACGTKAMSLFKRTLVLSPAAAPRSTGTAVGSAPRGCPLSPAAWP
SKDWLRGEGVGGRLRSPPAAGRLPPSHSCSSASPTSVCLLCPQDSLSSSLKTCYKYLNQT
SRSFAAVIEALDGEMRHAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSYLYEPDWR
YMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIVDICRKMGFGMAEFLDKHVTSEQEWDK
YCHYVAGLVGIGLSRLFSASELEDPLVGEDIECANSMGLFLQKTNIIRDYLEDQREGREF
WPQEVWSKYVKKLGDFAKPQNIDSAVKCLNELITNALHHIPDVITYLSRLRNQSVFNFCA
IPQVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIP
SSDPSSGKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTED
YVQTGEH
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaaaactctacgcgggccctgcgactcccatggccgtggccgcctgcggcacc
aaggccatgtccctgttcaagcggaccttggtgctgagccccgccgcggcaccccggagc
acgggcacggccgtgggctccgcgccgcgcggctgccccttgtctcccgccgcctggccc
tccaaggactggctgcgcggggagggcgtcggcggcaggctgcggagcccgccggcagcc
ggccgcctgcccccgtcccactcctgctcctccgcatcgcccacctccgtgtgtcttctc
tgcccccaggactcgctgagcagcagcttgaaaacttgctacaagtatctcaatcagacc
agtcgcagttttgcagctgtcattgaggcgctggatggggaaatgcgccatgcggtatgc
atattttatctggtccttcgagctctggacactcttgaagatgacatgaccatcagtgta
gaaaaaaaagttccactgttacacaactttcactcttacctttatgaaccagactggcgg
tatatggagagcaaggagaaggatcgacaagtgctagaggacttcccaacgatctccctt
gagtttagaaatttggctgagaaatatcaaacagtgattgttgacatttgccggaaaatg
ggatttgggatggcggagtttttggataaacacgtaacatctgaacaggagtgggacaag
tactgtcactatgtcgctgggctggtgggaattggcctttcccgtctgttctcagcctca
gagttagaagaccccttagttggtgaagacatagagtgtgccaattctatgggcctgttt
ctgcagaaaacaaacatcattcgtgattatctggaagaccagcgagaaggaagagagttt
tggcctcaagaggtttggagcaaatatgttaagaagttgggcgattttgctaagccacag
aatattgactcggctgtgaagtgcctgaacgaacttataaccaacgcactacaccacatc
ccagatgtcatcacttacctttcaagacttagaaaccagagtgtgtttaacttctgtgct
atcccgcaggtgatggccattgccactctggctgcctgttataataatcagcaggtgttc
aaaggcgtagtgaagatccgaaaagggcaagcagtaactctaatgatggatgccaccaat
atgccggcggtcaaagctataatctaccagtacatggaagagatttatcatagaatcccc
agctcagacccatcttctggcaaaacaaggcagatcatctccaccatcaggacacagaat
cttcccaattgtcagctgatctcccgaagtcactactcccctatttacctgtcatttgtc
atgctcttggctgccctgagctggcagtacctgagcaccctgtcccaggtcacagaagac
tatgttcagaccggagagcactga
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