Mirounga angustirostris (Northern elephant seal): 123851024
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Entry
123851024 CDS
T11530
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
mano Mirounga angustirostris (Northern elephant seal)
Pathway
mano03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mano00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123851024 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mano03041
]
123851024 (SNRNP200)
Enzymes [BR:
mano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123851024 (SNRNP200)
Spliceosome [BR:
mano03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123851024 (SNRNP200)
Complex C
U5 SnRNP specific factors
123851024 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
123851024
NCBI-ProteinID:
XP_045740452
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVDKDGIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgcccgtagcctgcagtacgagtacaaggcgaactcgaatcttgtc
ctccaagctgaccgctctctcattgaccggacccgccgggatgaacccacgggagaggtg
ctgtccctggttgggaagttggagggcacccggatgggagataaggctcaacggaccaaa
ccacagatgcaggaggaaagaagagccaagcgaagaaagcgtgatgaggaccgacacgac
attaacaagatgaagggttataccctgctgtccgagggaatcgatgagatggtgggcatc
atctataaacccaagactaaagagacccgggagacctatgaggtgctgctcagcttcatc
caggctgcccttggggaccagccacgtgatatcctttgtggggcagctgatgaagttcta
gctgtcctaaagaatgaaaagcttcgggacaaggaaagaagaaaggagattgacctgctg
ttgggtcagacagatgataccagataccatgtgctagtgaacttgggcaaaaagatcaca
gactatggtggagacaaggaaatccagaatatggatgacaacattgatgagacatacggt
gtgaatgttcagtttgagtctgatgaggaggaaggtgatgaagatgtgtatggggaggtt
cgagaagaggcatctgatgatgacatggaaggggacgaggctgtagtgcgttgcaccctt
tcagctaatcttgtagcctcgggggaactgatgagttccaaaaagaaggatttgcaccct
cgggatattgatgcattttggctacagaggcagctcagtcgcttctatgatgatgccatt
gtgtcacagaagaaggcagatgaagtgttggagatcttgaagacagccagtgatgatcgg
gaatgtgagaaccagctggttctgctccttggtttcaacacgttcgattttattaaagtg
ttgcgacagcacaggatgatgattctatactgtaccttactggccagtgcacagagtgaa
gcagaaaaggaaaggatcatgggaaagatggaagctgatccagaactctccaagttcctc
taccagctccacgagactgaaaaggaggatctgatccgggaggaaaggtcccggagagag
cgagtgcgtcagtcccggatggacacagacttggaaaccatggatctggaccagggtgga
gaggcactggctccacggcaggttctggacttggaggacctggtttttacccaggggagc
cacttcatggccaataaacgttgtcagcttcctgatgggtccttccgtcgccagcgcaag
ggctatgaagaggtgcatgtgcctgctctgaagcccaagcccttcggttcagaagaacaa
ttgcttccagtggagaagctgccgaagtatgcccaggctggatttgagggcttcaaaaca
ctgaacaggatccagagtaaactctaccgtgccgctctggagacagatgagaatctgctg
ctgtgcgcccctacgggtgcgggtaagaccaacgtggccctgatgtgtatgctccgagag
atcgggaaacacattaacatggatggcactatcaacgtggatgacttcaagattatctac
atcgctcccatgagatctttggtacaggagatggtgggcagttttggaaagcgcctggcc
acctatggcatcactgttgcggaactgactggtgaccaccagctgtgcaaggaggagatc
agtgccactcagatcatcgtctgcacccccgagaagtgggacatcattacccgcaagggt
ggggagcgcacctacacccagctcgtgcggctcatcattttggatgagatccaccttctc
cacgatgacagaggtcctgtcttagaagcattggtggctagggccatccgaaacattgag
atgacccaggaggatgtccgactcatcggtcttagtgccaccctccccaactatgaagat
gtggctaccttcctgcgtgttgatcctgccaaaggcctcttctacttcgacaacagcttc
cgcccagtgcctctggaacagacttatgtgggtatcacagagaaaaaagctatcaagcgt
ttccagatcatgaatgaaatagtctatgagaaaatcatggaacatgctggaaaaaatcag
gtgctggtgttcgtccactcccggaaggagactgggaagacagccagggccatccgggac
atgtgcctagagaaggacacactgggtctgtttctgagagagggctcagcctccacagaa
gtccttcggacagaagctgagcagtgtaagaacctggagctgaaggatcttctgccgtat
ggctttgctattcatcatgcgggcatgaccagagttgaccggacacttgtagaggatctt
tttgctgataaacacattcaggtcttagtttccacagcaacgctggcttggggtgtgaat
ctccccgcacatacagtcatcatcaaaggaacccaggtgtacagtccagagaaggggcgc
tggacagaactaggggcactggacattctgcagatgctcggacgtgctggaagaccccag
tatgacaccaagggcgaaggcatcctcatcacatctcacggggagctacagtactacctg
tccctcctcaaccagcagcttcctatcgagagccagatggtttcgaagttgcctgacatg
cttaatgccgaaatcgtgctggggaacgtgcagaatgccaaggatgcggtgaactggctg
ggctatgcctacttgtatatccgaatgctccgatccccaaccctctatggcatctctcac
gatgacctcaagggggatcccctgctggaccagcgccgactggatctggttcatactgct
gccttgatgctggataagaacaatctggtcaagtatgacaagaagacaggcaatttccag
gtgaccgagctgggccgcatcgccagccactactacatcaccaacgacacggtgcagacc
tacaaccagctgctgaagcccaccctgagcgagattgagcttttcagagtcttctccttg
tcctcagagttcaagaacatcactgtgcgggaggaggagaagctggagctgcagaagctg
ctagagcgggtgcctatcccggtgaaggagagcattgaggagcccagcgcgaagatcaat
gtgctgctccaggccttcatctcgcagctgaagttggagggctttgcgctgatggcggac
atggtatatgtcactcagtcggctggccggttgatgcgtgccatctttgaaattgtcctg
aaccgaggttgggcgcagcttacagacaagacactgaacctctgcaagatgattgacaag
cgcatgtggcagtccatgtgtcctctgcgccagttccggaaactccctgaggaagtagtg
aagaagatcgagaagaaaaacttcccctttgagcgcctgtatgacctgaatcataatgag
ataggggagcttatccgcatgccgaagatggggaagaccatccacaagtacgtccacctc
ttccccaagttggagttgtcggtgcacctccagcctatcacgcgctccaccctgaaagtg
gagctgaccatcacgccagacttccagtgggacgaaaaggttcacgggtcatcagaggca
ttctggattctggtggaggatgtggacagtgaggtgatactccaccacgagtattttcta
ctcaaggccaagtatgcccaggatgagcacctcattacattcttcgtgcctgtcttcgaa
ccgctgcctcctcaatacttcatccgagtggtgtctgaccgctggctctcttgtgagacc
cagctgcctgtctccttccggcacctgatcctaccagagaagtacccacctccaactgag
cttctggacctgcagcccttgcccgtgtctgccctgagaaatagtgcctttgagagcctt
taccaggataaatttccttttttcaaccccatccagacccaagtgttcaacaccgtctac
aacagtgatgacaatgtgtttgtgggggccccgacgggcagcgggaagaccatctgtgca
gaatttgccatcctgcggatgctgctgcagaactcagaggggcgctgtgtctatatcacc
cccatggaggctctggcggaacaggtgtacatggactggtatgagaagttccaggacagg
ctcaacaagaaggtggtgctcctgacgggggagactagcacagacctgaagcttctaggc
aagggcaatatcatcatcagcacccctgagaagtgggacatcctttctcggcggtggaag
cagcgcaagaatgtccagaacatcaacctcttcgtggtggatgaagtccaccttatcggg
ggcgagaacgggcctgtcttagaagtgatctgctcccggatgcgctacatctcctcccag
attgagcgacccattcgcattgtggcacttagctcgtcgctctcgaacgctaaggacgtg
gcccactggctggggtgcagcgccacctctactttcaacttccacccgaacgtgcgcccc
gtgcccttggagctgcacatccagggcttcaacatcagccacacacaaacccgcctgctc
tccatggccaagcctgtgtaccacgctatcaccaaacactctcccaagaagccggtcatt
gtttttgttccatcccgaaagcagacccgcctcactgccatcgacatcctcaccacgtgt
gcggcggacatccagcggcagaggttcttgcactgcaccgagaaggatctgatcccatac
ctggagaagctaagtgacagcacgctcaaggaaacactgctaaatggggtgggctacctg
cacgagggcctcagccccatggagcgacgcctggtggaacagctcttcagctcaggggcc
atccaggtggtggtagcttctcggagtctctgctggggcatgaatgtggctgcccacctg
gtgatcatcatggacacccagtactacaatggcaagattcatgcgtatgtggattacccc
atctacgacgtgcttcagatggtggggcatgccaaccgccctttgcaggatgacgagggc
cgctgtgttatcatgtgccagggctccaaaaaggatttcttcaaaaagttcctgtatgag
ccattgccagtagagtcccatctggatcattgtatgcacgaccacttcaatgccgagatt
gtcaccaagaccatagagaacaagcaggatgctgtggactacctgacctggacctttctg
taccgccgcatgacccagaaccccaattactacaacctgcagggcatctcccatcgccac
ctgtctgaccacttgtccgagctcgtggagcagaccctgagtgacttggagcagtccaag
tgcatcagcattgaggacgagatggatgtggcacccctgaacctgggcatgatcgctgct
tactattacatcaactacaccaccattgagctcttcagcatgtccctgaatgccaagacc
aaagtgcgagggcttattgagatcatctccaatgcggcggagtatgagaacattcccatc
cggcaccatgaagataacctcctgcggcagttggctcagaaggtcccccataagctgaat
aacccgaagttcaatgacccgcacgtcaagaccaacctgcttctgcaggctcacctgtcc
cgcatgcagctgagcgctgagctgcagtcggatacggaggaaatcctcagcaaggcaatc
cggctcatccaggcctgtgtggacgtcctttccagcaacgggtggcttagccctgccctg
gcagcgatggagctggcccagatggtcacccaagccatgtggtccaaggactcctacctg
aaacagttgccacacttcacgtcagagcatattaaacggtgcacagataagggagtggag
agcgtttttgacatcatggagatggaagacgaagaacgaaacgcactgcttcagctgtct
gacagccagatagccgacgtggcccgcttctgcaaccgctacccgaacatcgagctttct
tacgaagtggtggataaggatggcatccgcagcggcgggccagtggtggtgctggtgcag
ctggagcgtgaggaggaagtcacaggccccgtgatcgcgcctctctttccgcagaaacgt
gaagagggctggtgggtggtgatcggcgatgccaagtccaatagcctcatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaagcttgactttgtggccccagccactggt
gcccacaattacaccctgtatttcatgagtgatgcttacatgggatgtgaccaggaatac
aaattcagtgtggacgtgaaggaagcggagacagacagtgactcagactga
DBGET
integrated database retrieval system
