Mirounga angustirostris (Northern elephant seal): 123853877
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Entry
123853877 CDS
T11530
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mano
Mirounga angustirostris (Northern elephant seal)
Pathway
mano03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mano00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123853877 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mano03041
]
123853877 (DDX42)
Enzymes [BR:
mano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123853877 (DDX42)
Spliceosome [BR:
mano03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123853877 (DDX42)
Complex B
123853877 (DDX42)
Complex C
U2 SnRNP specific factors
123853877 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
123853877
NCBI-ProteinID:
XP_045744618
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPLGSATKGIPGFGNTGNLSGAPVTY
PSAGAQGVNNTASGSNSREGPGGGNGKRERYTENRGGSRHGHGESGNRHGDSPRHGEGGR
HGDGYRYPESSSRHADGHRHGESRHGGGGSRHGESRGANDGRNGESRKEGCNRESKVDPK
VDSKMDKVDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcaccaagaggggatttggctttggaggttttgct
attagtgctggaaagaaggaggagcccaaactcccacaacagtcccacagtgcctttggg
gcaaccagctcttcttctggatttggaaagtcagctccaccacagctcccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcatattttgaagatgaggaa
gaagactctagcaatgttgatttaccttacattcctgctgaaaactcacctacccgtcag
cagttccattccaagccagcggattctgacagcgatgacgatcccttggaggcattcatg
gccgaagtggaggatcaggcggctagagacatgaaaaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtacatggcagagaacccaactgctggtgtggttcaggaggaggaagaagataat
ttggaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgag
catgaagagataaccaacctcacccctcagcagctaatagatctccgtcataagctcaat
cttcgggtctctggtgctgcgcctcctagaccaggaagtagttttgctcactttgggttt
gatgaacaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacag
tgccagggtgtgcctgtggcattaagtggtagagacatgattggtattgccaaaaccggc
agtggaaaaactgcagcctttatctggcccatgttgattcatataatggaccagaaggaa
ttggaaccaggtgatgggccaattgcagtgatagtgtgtcctactagggagctttgccag
cagatccatgcagaatgtaagcggtttgggaaagcatataatcttcgatcagtcgctgta
tatggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccaggtcgactaattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagcagatcgcatgtttgacatgggatttgagtaccag
gtgcgatccatagcaagtcatgtccgtcctgacagacagactcttttattcagtgcaact
tttcggaaaaaaattgaaaaactggccagagacatcctgatcgaccctattcgtgtggtg
cagggagacattggagaggcgaatgaagatgtgacacagattgtagaaattctccattct
gggcctagtaaatggaactggcttacccggcgtctggtggaatttacctcttcaggaagt
gtcctcctgtttgttactaaaaaagccaatgctgaagagctagccaataaccttaagcag
gagggtcataatcttgggctgcttcatggggacatggatcagagtgaaagaaacaaggtc
atttcagactttaagaaaaaggacatcccagtcctggtggccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgttattaactatgacgtggcacgagacattgat
actcacactcataggattggccgcacaggacgagcgggtgagaaaggcgtggcttatacc
ttactgacccccaaggacagcaattttgctggtgaccttgtccggaacttggaaggagcc
aatcagcatgtttccaaggaactcctagatctggcaatgcagaatgcctggtttcggaaa
tcccgctttaaaggaggaaaaggcaaaaagctgaacattggtggaggcggcctaggctac
agggagcggcctggcctaggctcagagaacacggaccgaggaaacaacaataatgtgatg
agcaattatgaggcctacaagccctccacaggagccatgggagatcggctgacagcaatg
aaagcagctttccagtcacagtacaagagtcactttgttgctgccagcttaagcaaccag
aaggcgggaagctctgctgctggcgcaagtggatggactagtgcagggagcttgaattcc
gtcccaactaattcagcccagcagggccataacagtccagacagcccccttggcagtgcc
accaagggcatcccaggctttggcaatactgggaacctcagcggtgctccagtgacctac
ccttctgctggagcccagggagtcaacaatacagcttcagggagtaacagccgagaaggg
cctgggggaggcaatgggaagagagagagatacacggagaaccggggtggcagccgtcat
ggtcatggagagagtggcaatcggcatggcgacagtccacgtcatggagagggtggtcgc
catggagatggataccgctaccccgaaagcagcagccgtcatgctgacggccaccgtcat
ggggagagtaggcacggaggaggtggcagccgacatggagagagccgaggtgcaaacgat
ggtcggaatggtgaaagcaggaaagagggttgtaatcgtgagagcaaggtggaccccaag
gtggacagcaagatggacaaggtggacagcaagacagataagacagccgatggtttcgct
gtccccgagccacccaagcgcaagaaaagtcgatgggacagttag
DBGET
integrated database retrieval system
