Mirounga angustirostris (Northern elephant seal): 123862928
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Entry
123862928 CDS
T11530
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
mano Mirounga angustirostris (Northern elephant seal)
Pathway
mano03008
Ribosome biogenesis in eukaryotes
mano03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mano00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
123862928 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
123862928 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mano03019
]
123862928 (XRN1)
03009 Ribosome biogenesis [BR:
mano03009
]
123862928 (XRN1)
03016 Transfer RNA biogenesis [BR:
mano03016
]
123862928 (XRN1)
03036 Chromosome and associated proteins [BR:
mano03036
]
123862928 (XRN1)
Messenger RNA biogenesis [BR:
mano03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123862928 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
123862928 (XRN1)
Ribosome biogenesis [BR:
mano03009
]
Eukaryotic type
Pre-60S particles
RNases
123862928 (XRN1)
Transfer RNA biogenesis [BR:
mano03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
123862928 (XRN1)
Chromosome and associated proteins [BR:
mano03036
]
Eukaryotic type
Gene silencing
piRNA pathway
123862928 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
123862928
NCBI-ProteinID:
XP_064442943
LinkDB
All DBs
Position
Unknown
AA seq
1744 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNYKEKKKSKGQENAICWAALDKNGEEVVTSKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
CWYDRDTEFSYPSPWPEKFPAIERCCTRYKIISLDAWRVDISKNKITRVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESVELSVENIASSVLGKSVFVNWP
HLEEARVVGISDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQSNWTKEVQGISEY
YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAFD
SRFSNIKTLDDLFPPRSMVFMLGTPYYGCAGEVQDSGDVITEGRIRVVFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFHLFDRVVNVRENFSVPVGLRGTIIGIKGANREADILF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLTHGSRSETGNQKLTAIVKPQPAVNQYSS
NSSISSGHLGGLNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKVQHFQPTLQEKVAVL
PQEVSQVTQHHKSGFTDNSVKCQQRKHEPHRKFKEECKSPKTESRLQKMANKQMLGGPAQ
CNIKLLKRNESAEVSENQKVVTSYPNAIDKPNPGIENFLASLNISKENEVQSSHHEEPPS
EELLSPQSFAMKGTRMLKEILKIDGSDAVDHKNEMKQFGNEVTVSSNRRDEYGPSSQAKQ
NKKLTSYMNKPHSASEYHNVQPMDHVCWPAPSHIPPVSTPVTELSRICSLVGMLQPDFSF
LRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFALQQLGSLGVNFPLPPPIFPNY
PPAVPPGTIPPVFPQPTGWDHYGSNLALGAANIMPSSSHLFGSMPWGPPVPVPGKPFHHT
SYSGTMPMAGGLPGGVHNQFIPLQVTKKRVANKKNFESKEAQSSQATPLQTSQPGSSNVT
KVIPQECSSASLKSSQITQPASSFQAEAASQGHSMSHHKSTPSSSSRRKSRKLAVNFGVS
KPSE
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcggtatccctgcctcagtgaagtg
gtgaaagagcatcagattcctgaatttgataacttgtacctggatatgaatggaatcata
catcagtgttcccatcccaatgatgatgatgttcacttcagaatttcagatgataaaatc
tttactgatatttttcactacttggaggtgttgtttcgcattattaaacctaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgggggagg
cgttttaggtcagcaaaggaggcagaagacaaaataaaaaaggcattagaaaaaggagaa
actcttcctacagaggccagatttgattccaactgtattacaccaggaactgaattcatg
gccaggttacatgaacatctgaagtattttgtaaatatgaaaatttctacagataagtcg
tggcaaggagttaccatctacttctcaggccatgagactcccggagaaggagagcataaa
atcatggaatttatcagatcggagaaagcaaagccagatcatgatccaaacaccagacat
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcacgaggcacat
ttctctcttttaagagaagaggttcggtttggtggcaaaaagacacaaagggtatgtgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagagtatattgactat
gagttttcagtattaaaagacaagatcacttttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttggtggttatattaatgaaagtgggcatctcaacttacctagatttgagaaatacctt
gtgaaactatcagattttgatcgggaacacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgttgcagcagaagaa
gccaagaactacaaggaaaagaaaaaatcaaagggccaggaaaatgccatttgttgggct
gctttagacaaaaatggagaagaagtggtaacttctaaggataatttagaagatgaaact
gaagatgatgacctatttgaaactgagtttagacaatataaaagaacatattacatgacg
aagatgggagttgatgtagtgtctgacgactttctggctgatcaagctgcatgttatgtt
caggcaatacagtggattttgcactattactatcacggagttcagtcttggagctggtat
tatccctaccattatgcccctttcctatctgatatccgtaacatcagtacactcaaaatc
cattttgaactaggaaaaccttttaagccatttgaacagcttcttgctgtactcccagca
gctagcaaaaatttacttcctacatgctaccagcacttgatgaccagtgaagactcacca
attatagaatattatccacctgattttaaaactgacctaaatgggaaacaacaggaatgg
gaagctgtggtactaataccttttattgatgagaagcgattgttggaagccatggaaaca
tgtaaccactccctcaaaaaggaagaaaggaaaagaaaccaacatagtgagtgcctcatg
tgctggtatgatagagacacagagttcagctacccctcaccatggccagaaaagttccct
gccatagaacgttgttgcacaaggtataaaataatatcattagatgcttggcgtgtagac
ataagcaagaacaaaataaccagggttgaccagaaggcactgtatttctgtggatttcct
accctgaaacacatcaaacacaaattttttttgaagaaaagtggggttcaagtattccag
caaagcagtcgtggagaaaacatgatgttagaaatcttagtgaatgcagaatcagttgaa
cttagtgtagaaaatatagcttcatcagtgcttggaaagtctgtctttgttaattggcct
catcttgaagaagctagagttgttggtatatcagatggagaaactaaattttacttggaa
gaacctccaggaacacagaagctttatttgggaagaactgccccaccatctaaagtggtc
catcttggagacaaagaacaatctaactggacaaaagaagtacaaggaatttcagaatac
tacctaagaagaaaaggaataataataaatgaaacatctgcagttgtatatgctcagtta
ctcacaggtcgtaaataccaaataaatcaaaatggtgaagttcgtctagagaaacaatgg
tcaaaacaagttcttccttttgtttatcaaactattgtaaaggacatccgagcttttgac
tcccgtttctccaatatcaaaacattggatgacttgtttcctcctagaagtatggtcttt
atgctgggaaccccctattacggctgcgctggagaagttcaagattcaggggatgtgatt
acagaaggtaggattcgtgtggttttcagcattccatgtgaacccaatcttgatgcttta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgt
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattcaac
aaaaaaaatgaggaggtacctggatataccaagaaagttggaagtgagtggatgtattca
tctgcagcagaacagcttcttgcagagtacttagagagagctccagaactatttagttat
atagccaaaaatagccaagaggatgtattctatgaagatgacatttggcctggagaaaat
gagaacggtgctgagaaagttcaagaaattattacttggctaaagggacatcctgtcagt
actttgtctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaatt
gaggaagaagtcgaaaagtgcaagcaaagaaagaataataagaaggtacgagtgacagtg
aagccccatttgctgtacagacctttagaacagcaacatggagtcattcctgatcgagat
gcagaatttcatctctttgaccgtgtggtaaatgtgagagagaacttttcagttccagtt
ggccttcggggcaccatcataggaattaaaggggccaatagagaagctgatatactattt
gaagtattatttgatgaagaatttcctggaggcttaacaataaggtgctcacctggtaga
ggttatcgactgccaacaagtgccttggtgaatcttactcatgggagtcgctctgaaacc
ggaaatcagaagttgacagccattgtgaaaccacaaccagctgtgaatcaatatagctca
aattcatcaatttcatctgggcatttgggaggcctgaaccattcccctcaatcacttttt
gttcctactcaagtacctactaaagatgatgatgaattttgcaacatttggcagtcctta
cagggatctggaaaggttcaacactttcagccaactctacaagagaaagttgcagttcta
cctcaagaagtaagtcaagtaactcaacatcataaatctggctttactgacaacagtgtt
aaatgtcagcaaagaaaacatgagcctcacagaaaatttaaagaagagtgtaagagtcct
aaaactgagagtcggttacaaaaaatggcaaataagcagatgcttggagggcctgcccaa
tgtaatattaagctattgaagagaaatgaaagtgcagaagtgtcagaaaaccagaaggtt
gtgaccagttacccaaatgctattgataagcctaaccctggaattgagaactttttagca
tccttgaatatctccaaagaaaatgaagtacagtcatctcatcatgaagagcctccaagt
gaagaacttttgtcaccacaatcatttgctatgaagggaactcggatgcttaaagaaata
ctaaaaattgatggctctgatgctgtggaccataaaaatgaaatgaagcagtttggtaac
gaagtcactgtttcctctaatagaagagatgagtatggaccttcctcccaggctaaacaa
aataagaaattaacatcttatatgaataagcctcacagtgctagcgaataccataatgtt
cagcctatggaccatgtgtgttggcctgctcccagccatatccctcctgtgtccacacca
gtaactgaactttctcgaatttgttcccttgttggaatgctacaaccagatttctccttt
cttagaacaccacagacaatgacagtttgccaggtaaaattatctaatggcttactggta
catggaccacagtgccattctgaaaatgaagccaaggaaaaagccgcactttttgcttta
caacaattgggctccttaggagtgaatttccctttgcctccaccaatatttccaaattat
cctcctgctgtaccacccggaaccattcctccagtttttcctcaacctactggctgggat
cactatggaagcaacttagcattgggggcagctaatataatgccttcatcatctcatctc
tttggctccatgccatggggaccaccagtgccagttcctgggaagccatttcatcatact
tcatactctgggaccatgcccatggctgggggattgccaggtggtgtgcacaatcagttc
atacctctacaggttactaaaaaaagggttgcaaataaaaagaactttgagagtaaggag
gcccagagttctcaagctaccccgcttcagactagccagccagggtcttccaatgtcacc
aaagtgattccacaggagtgttcatcagcctccttaaagtcctctcagattactcaacct
gcatcttcttttcaagctgaagctgcctcccaaggccatagtatgtctcatcacaagtcc
acaccaagctcatcttcaagaagaaaatcaagaaaactggctgtcaattttggcgtttct
aaaccttctgaataa
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integrated database retrieval system
