Marinobacter sp. NP-4(2019): EHN06_02125
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Entry
EHN06_02125 CDS
T09527
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
manp
Marinobacter sp. NP-4(2019)
Pathway
manp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHN06_02125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manp03019
]
EHN06_02125
Messenger RNA biogenesis [BR:
manp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EHN06_02125
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
PAR1
Motif
Other DBs
NCBI-ProteinID:
AZT82432
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Position
481028..482410
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AA seq
460 aa
AA seq
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MTPDHNDLWFLPLGGTGEIGMNLNLYGHGGQWLMVDCGVTFPRPGRIAADGTIHHRGEPP
VQMADPAFITDRRDQLAGLIITHAHEDHVGAVPYLWPLLQCPLYTSRFTAEILRRKLAEF
DLLHRVPIIVVETGERRPIGPFDVQWLALTHSIPDPNALMIRTPLGNIFHSGDWKLDDQP
LVGHGYSRKTFTDLAEEGVAAMVCDSTNATVAGHSVSEAALHDGLLAAINGAEGRVVVTC
FGSNIARLHTLAMIARETGRYMGLLGRSLINMSGAAKAAGLWESADQLISASHLGYLPRH
EVLAVATGSQGEPRTALRRLANGSHPDFELESGDTVIFSARAIPGNEEAIDALIGRLRTM
GVTVITAEEAALPIHASGHPAREELEAMYQWVRPDVAIPVHGEAEHMEAHACIARACGVP
RSLVGRNGDLFMIRPVPGIRRQVVETGRLGWEKQELVPVF
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
ttgacccctgatcacaacgacctctggtttttaccccttggtggcaccggcgagattggc
atgaacctcaacctgtatggccatggcggccagtggctgatggtggactgcggcgttacc
tttccccggcctggccgaattgccgcggacggcaccattcaccatcgcggtgagccgccg
gtgcaaatggcggaccctgcgtttattaccgatcgccgtgatcagctcgccgggctgatt
atcacccacgcccatgaggatcacgtgggggcggtgccctatctttggccactgttgcag
tgtcccctctacaccagccgttttaccgccgagatacttcgtcgcaagctggcggagttt
gatctgctgcaccgggtaccgatcatcgtcgtggagaccggggagcgcagaccgataggg
ccgttcgacgttcagtggctcgcgctgacccattcgatccccgatcccaatgccctgatg
atccgcaccccgctgggcaacatctttcacagcggcgactggaagctggacgaccagccg
ctggttggtcacggttattcccgcaaaaccttcaccgatctggctgaggaaggcgtggcc
gccatggtgtgtgactccaccaacgccaccgtggcgggccactcggtttccgaggccgcc
cttcatgacggcctgcttgcggccattaacggggcggaaggtcgcgtggtggtgacctgt
tttggcagcaacatcgcccgtctgcacaccctggcgatgattgcccgggagaccggccgc
tatatgggcttgctggggcgatcactgatcaacatgagcggtgcggcgaaagcggccggc
ttgtgggagtctgccgatcagctgatcagcgcttcccatctggggtatctgccccgtcat
gaggtgctggcagtagcgacgggcagtcagggtgaaccccgcacggccctgcgccgcctg
gccaatggcagccatccggatttcgagctggaaagcggcgatacggtcattttcagcgcc
cgggccattcccggcaacgaagaggcaattgatgccctgatcggccggctcagaaccatg
ggtgttaccgtcatcacggcggaagaggcagcactccccatccatgcctccggacatccc
gcccgggaggaactcgaagccatgtaccagtgggttcggcccgatgtggccatcccggtc
cacggagaggccgaacatatggaggctcacgcctgtatcgcgagagcctgtggcgtaccc
agatccctggttggtcgtaacggcgatctgttcatgatccgcccggttcccggcatccgt
cgccaggtggtggaaaccggtcgccttggctgggaaaagcaggagttggtgccggtgttc
tga
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