Marinobacter sp. NP-4(2019): EHN06_03955
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Entry
EHN06_03955 CDS
T09527
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
manp
Marinobacter sp. NP-4(2019)
Pathway
manp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
manp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EHN06_03955 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
manp03021
]
EHN06_03955 (rpoC)
03400 DNA repair and recombination proteins [BR:
manp03400
]
EHN06_03955 (rpoC)
Enzymes [BR:
manp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EHN06_03955 (rpoC)
Transcription machinery [BR:
manp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EHN06_03955 (rpoC)
DNA repair and recombination proteins [BR:
manp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EHN06_03955 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AZT82757
LinkDB
All DBs
Position
880262..884476
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLLKSQNQSKEFDAIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALASVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFIVIDPGMTTLEKGQLLNDEQYYEALEEFGDEFDARM
GAEAVKELLEGIDLQEEVDALREEIPQTNSETKIKKFSKRLKILEAFLYSGNKPGDMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVEREEGVVWDILDEVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERKSALGEGMVFADVKEAHRAYGAG
KVDLQAIVKVRVKEVTIQEDGQRTEEYKIVDTTVGRALLFDIVPDGLSFELVNKPMVKKA
ISNLINTCYRDAGLKDTVIFADQLMYMGYHYATVSGISIGFNDFEIPPEKYELVDAASEE
VKDIETQYASGLLTQGEKYNKVIDIWSRANDKVSKAMMERLSKEQVIGPDGKPVKGEDGE
DEMQESFNSVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY
FISTHGARKGLADTALKTANSGYLTRRLVDVSQDLVVTEEDCGTSEGLLMTPHIEGGDVV
VPLGDRVLGRVTARDAFTPTDKDNAVVPSGTLLDEKTVETLERAGVDEVWVRSAITCETR
HGICSKCYGRDLARGHEVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDNIQ
VKHGGTVRLHNLKSIEKSDGSLVVISRSSALAIADDQGREREWYKLPYGAVLSVKHGDAV
EAGVVVAKWDPHTHPIIAEAGGTAKFVNMDQGITVRTQTDELTGLSTMEVIDSKERPAAG
KDIRPAIQLVDEKGEDVELPGGGTAIFFLPANALVTMANGARIELGDVVARIPQESSKTR
DITGGLPRVADLFEARRPKESSILAEISGTVSFGKETKGKKRLVITPKDGDAYEVLIPKH
RQLNVFEGETVEKGEVISDGPSNPHDILRLLGVVELAKYITNEIQDVYRLQGVVINDKHI
EVIVRQMLRKVEITDPGDTTLLSGDQVEITQVLEENEKANAADKEPARFERLLLGITKAS
LATESFISAASFQETTRVLTEGAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHNERRRKR
DLEEQGVTAADVEEALSAELNRES
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgctgaatcttctcaagagccagaatcaaagcaaggaatttgatgctatc
cgtatcgggctggcatctcccgacatgattcggtcatggtcttttggcgaggtcaaaaag
cctgagactattaactaccgtaccttcaagccggagcgtgacggtctgttctgtgccaag
atcttcggcccgatcaaggattatgagtgcctgtgtggcaagtacaagcgcctcaaacat
cgcggtgtgatctgcgaaaagtgcggcgttgaagttgcgctggccagtgttcgtcgtgag
cggatgggccatattgagctggccagcccggtcgctcacatctggttcctgaagtcactg
ccgtcccgtatcggcctgatgctggatatgaccctgcgtgacatcgagcgggtgctttac
ttcgagtccttcattgtcattgatccgggcatgacgaccctggagaagggccagctgctg
aatgatgagcagtactacgaggcactggaagagtttggtgacgaattcgatgcccgtatg
ggtgccgaggccgtcaaggaattgctggaagggattgatctccaggaagaagtggatgct
ctgcgtgaggagatcccgcagaccaactccgaaaccaagatcaagaagttcagcaagcgc
ctgaagattctcgaggccttcctgtactccggcaacaagccgggtgatatggtgatgacc
gtgctgccggttctgccgccggacctgcgtccgctggtaccgctggacggtggccgcttt
gccacgtctgacctgaacgacctgtaccgtcgggtgatcaaccggaacaaccgcctcaag
cgcctgctggagctgaatgctccggacatcatcgtgcgcaacgaaaagcggatgctgcag
gaagccgtagacgcactgctggacaacggccgtcgtggccgcgccatcaccggcaccaac
aagcgcccgctgaagtctctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgcgtggactactccggtcgttccgtgatcgtggtgggtccgtac
ctgcgcctgcatcagtgtggtctgccgaagaaaatggctctggaactgttcaagccgttt
attttctccaagcttgagcaccgtggcctggcaaccacgatcaaggccgccaagaagatg
gtcgaacgcgaagaaggcgtggtctgggatatcctggatgaagtcatccgcgaacacccg
atcatgctgaaccgtgcgccgaccctgcaccgtctgggtattcaggcgttcgagccggtg
ttgatcgaaggcaaggcgattcagttgcacccactggtgtgtgccgcctacaacgccgac
ttcgatggtgaccagatggcggtacacgtaccgctgaccctggaagcccagttggaagcc
cgtgcgttgatgatgtcgaccaacaacgtgctgtcaccggccaacggcgagccgatcatc
gtgccgtcccaggacgtggttctgggtctgtactacatgacccgtgagcgtaagagcgca
ctgggtgaaggtatggtctttgccgacgtgaaagaggcacaccgtgcctacggtgccggc
aaggtcgaccttcaggccatcgtcaaggtgcgtgtgaaagaagtcacgatccaggaagac
ggtcagcgtaccgaagagtacaagattgttgataccaccgttggtcgcgcactgctgttc
gatatcgtgccggacggtctgtctttcgagctggtcaacaagccgatggtcaagaaggcg
atctccaacctgatcaacacctgttaccgggatgcgggtctgaaagacaccgtcatcttc
gccgaccaactgatgtacatgggttaccactacgccacggtctccggtatctcgatcggt
ttcaatgacttcgagatcccgccggagaagtacgagctggtggatgccgcctccgaggaa
gtgaaggacatcgaaacccagtacgcgtccggtctgctgacccagggcgagaagtacaac
aaggttatcgatatctggtcccgcgccaacgacaaagtgtccaaggcgatgatggagcgc
ctgtcgaaagagcaggtgatcggccctgatggcaagccggtgaagggcgaagacggcgaa
gacgaaatgcaggagtcgttcaactccgtgtacatgatggccgattccggggcgcggggt
tccgctgcccagatccgtcagctcgccggtatgcgtggcctgatggcgaagccggatggc
tccatcatcgagacgccgatcaccgcgaacttccgtgaaggtctgaacgtactgcagtac
ttcatctccacacacggtgctcgtaagggtctggcggataccgccctgaagaccgcgaac
tccggttatctgacgcgtcgtctggttgacgtctctcaggatctggtggtgaccgaggaa
gattgtggcacctccgaaggcctgctgatgacgccgcacatcgaaggtggcgacgttgtt
gtgcctctgggtgatcgggtactgggtcgtgtgaccgcccgtgacgcattcaccccgacc
gacaaggacaacgcggttgttccgtccggcaccttgctggatgagaaaaccgttgaaacc
ctggaacgggccggtgtggacgaagtctgggttcgctccgcgattacctgtgagacgcgc
cacggtatctgctccaagtgctacggtcgtgatctggcccgtggccatgaggtcaacgtg
ggtgaggccgtgggtgtcatcgccgcccagtctatcggtgagccgggtactcagctgacc
atgcggacgttccacattggtggtgctgcgagccgggcctccgccgtggacaatatccag
gtcaagcatggcggcaccgttcgcctccacaacctgaagtctattgaaaagagcgatggt
tccctggtagtgatctcccgctcctccgcgctggcaatcgccgatgaccagggccgtgag
cgtgagtggtacaagctgccttatggcgcggttctgtccgtgaaacacggggatgccgtg
gaagccggcgtcgtggtcgccaaatgggatccgcatactcacccgatcattgcggaagcc
ggtggtaccgccaagtttgtcaatatggatcagggcattaccgtccgtacccagaccgac
gaactgaccggtttgtccaccatggaagtgatcgattcgaaggagcgtccggctgctggc
aaggacatccgtccggctattcagctggttgacgaaaagggcgaggacgtggagctgccg
ggcggcggtactgcgatcttcttcctgccggccaatgctctggtgaccatggccaacggt
gccaggatcgagctgggtgatgtcgttgcacgtattcctcaggaaagctcgaagacccgg
gatatcaccggtggtctgccgcgggttgccgacctgttcgaggcgcgtcgaccgaaagag
tcgtccatcctggcagaaatcagcggcacggtatctttcggcaaggaaaccaagggcaag
aagcgcctggtgatcactccgaaggacggcgacgcctacgaagtgctgattccgaagcat
cgtcagctcaacgtgtttgaaggtgaaaccgttgagaagggtgaagtgatttccgacggt
ccgtccaacccccatgacattctgcgtctgctgggtgtggttgagctggccaagtacatc
accaacgaaatccaggacgtttaccgtctgcagggcgttgtcatcaacgataagcacatc
gaggttatcgttcgtcagatgctgcgcaaggtggagattaccgatccgggtgataccacg
ctgttgtctggtgatcaggtcgaaatcacccaggttctggaagaaaacgaaaaggccaat
gcggcagacaaggagccggcacggttcgagcgtctgctgctgggtatcaccaaggcttca
ctggcaaccgagtcgttcatttccgcggcttcgttccaggaaaccacccgggtgctcacc
gaaggtgcggtcaccggtaagcgtgattacctgcgcggcctgaaggaaaacgttgtggtt
ggtcgcctgatcccggccggtaccggtctggcgtaccacaatgagcgtcgtcgcaaacgc
gacctggaagagcagggcgtaaccgcggccgacgtggaagaagctctgagtgctgagctc
aaccgcgaaagctga
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integrated database retrieval system
