Marinobacter sp. NP-4(2019): EHN06_12085
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Entry
EHN06_12085 CDS
T09527
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
manp
Marinobacter sp. NP-4(2019)
Pathway
manp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHN06_12085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manp03019
]
EHN06_12085
Enzymes [BR:
manp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EHN06_12085
Messenger RNA biogenesis [BR:
manp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EHN06_12085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AZT84219
UniProt:
A0A3Q9NJ88
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All DBs
Position
complement(2661284..2662579)
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AA seq
431 aa
AA seq
DB search
MTSDPSETGKTLFKDLNLDQRLLDAITDIGFEYCTPIQAETLPFTLACQDLIGQAQTGTG
KTAAFLITAIQSLLETPVPEKERFASEPRVLALAPTRELAMQIAKDAEQLCGYTGHNVVT
VVGGMNYDKQRDQLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFI
PDVKRIIRKCTPKEDRQTLLFSATFNQDVLNLASMWTRNAEFVEIEPEQKTAERVEQTVY
LVGEDEKLPVLVNYLKRPDVEKAIVFANRRDQCRDLDEDLRNQGVKVALMSGEIAQNKRL
KTLDQFKKGTIQVLVATDVAGRGIHVNGVTHVFNYNLPENAEDYVHRIGRTGRAGKTGVS
VSFASEDDAFSLPAIETYISQKLKTAVPDEELMTALPNAPITRKRGGRRPQGSRGQGGRS
QGGRPQRQRRN
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacatctgacccaagtgagaccggcaagacgctgttcaaggatctcaatctcgatcag
cgcctgctggacgcaatcaccgacataggtttcgagtattgcacaccaatccaggcggag
accttgccgtttactctggcctgtcaggatcttataggccaggcgcagaccggtaccgga
aaaacggcagccttcctgattacggccatccagagtctgctggagacaccggtcccggaa
aaagagcgctttgcgtccgagccccgtgtgctggctctggcgccgacccgggaacttgcc
atgcagattgccaaggatgccgagcaactctgcggctacaccggccataacgtagtgacg
gtggtcggtggtatgaactatgacaaacagcgtgatcaactgcagaacgagatagttgat
attttggttgccacgcccgggcgtttgattgactttctgggctctcaggacgtcttcctg
gatcagctggatattctgattctggacgaagcggaccgcatgctggacatgggctttatt
cccgacgtcaagcgcatcattcgcaagtgcacccccaaggaagaccgccagaccctgctg
ttcagcgcgacgtttaatcaggatgtgctgaatctggcttccatgtggactcgcaatgcc
gagtttgtggaaattgagccagagcagaaaaccgcagagcgggtcgagcagacggtttac
ctcgtgggtgaggacgaaaagctgccggtgctggtgaattacctgaagcgaccggatgtg
gaaaaggccattgtctttgccaatcggcgggaccagtgccgggacctggacgaggatctg
cgtaaccagggcgtgaaagttgccctgatgtccggggaaattgcgcagaacaaacgtctg
aagactcttgaccagttcaagaaaggcactatccaggttctggtggcaacagacgttgcc
ggtcgggggattcacgtcaacggtgttacccacgttttcaactacaatcttcccgagaac
gccgaagattatgtacaccgtattggtcgcaccggccgcgccggtaaaaccggtgtatcg
gtgagctttgcaagcgaggatgatgccttctcgctgccggctattgagacctacattagc
cagaagctcaagaccgctgtaccggatgaagagttaatgacagccttgcccaatgcgccg
atcacccgaaagcgtggcgggcgccgtccccagggaagccgggggcagggtggtcgcagc
cagggcggacgcccgcagcgacagcgcaggaactaa
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