Marinobacter sp. NP-4(2019): EHN06_12780
Help
Entry
EHN06_12780 CDS
T09527
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
manp
Marinobacter sp. NP-4(2019)
Pathway
manp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHN06_12780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manp03019
]
EHN06_12780
03009 Ribosome biogenesis [BR:
manp03009
]
EHN06_12780
Enzymes [BR:
manp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EHN06_12780
Messenger RNA biogenesis [BR:
manp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EHN06_12780
Ribosome biogenesis [BR:
manp03009
]
Prokaryotic type
rRNA processing factors
EHN06_12780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AZT84342
UniProt:
A0A3Q9NML1
LinkDB
All DBs
Position
2809175..2812294
Genome browser
AA seq
1039 aa
AA seq
DB search
MKRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISKEYFKKSPGQIEGKINIKDVVSEGQEVIIQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEAMNDVQVPKSMGIIVRTAGIGRSTEE
LQWDLDYLVQFWEAITQAASERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDAPTVHED
VLNFVRAVMPTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGHDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVE
QKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLA
LSIMRLIYEESSKEKTGEVRAIVPVAVATFLLNEKRKQLADIEARQEVSLVVVPAPHMET
PHFEIVRMRDDETGPEHVSSYQVAEEYSQREEEVYEAPTAQQPVREQAAVKAIRPTAAPA
PTPAKVTATAANDQEEGLFRKLGRKIACFFRGESTTTDKEQQQTARTVREDRRTQGRQDR
RKSRVARDDGRQGNRSGGDRRQSGQQQSRGDDNRNRSRARGEDQSRGGQQGRQGADGKGG
DSRRGGQGRGQGRNRPQRDQKDQREQKDQKDTREQQDSTAKSAPEKGGSDDKRRKPRRAR
NRDGSPAETPASTPADRKASRSERHQKDTQPEERQDTSQPEVKADAKPKVAEAQAPKAED
KPSEKATKADSQTPAKTEKKPEQPEQKSESKAGEKARNDGAPASDTKAETKPESKPARKQ
PEKKAESKTEDKAPKEPKAESKVADSKPAVPGEAPKATEAPETAAKSGDQDKQAAEDKAQ
APKADVAKPETPAADTRTEPKAEPAAEKPAPKVEKPAAQPEKQEAKTEPAPADKSSEKPA
EAEKQPEPEAKKPEPEAKKPEPETKQPEPETKQPEKAAEQPSADKAPEVPVTPGRAYNDP
REVRKRQRAAEEAKKAGSN
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaatgcaactcatcctgaagagttgcgcgtcgccctcgtagac
ggccagcgtctgtttgatcttgatatcgaatccagctcccgtgagcagaagaaagccaac
atctacaagggtcgtatcacccgcgtagagcccagcctggaagccgcctttgtcgacttc
ggcgcggaacggcacggctttctgcccctgaaggaaatctccaaggagtatttcaagaaa
tccccggggcagatcgaaggcaagatcaacatcaaggacgtggtctccgaaggccaggaa
gtcatcattcaggttgacaaggaagagcgtggcaacaagggcgcagccctgaccaccttc
atttccctcgcgggccgctatctggtcctgatgcccaacaacccccgtgccggtggtatt
tcccgccgcatcgaaggcgaggaacgcgcccaactgaaagaggccatgaacgacgttcag
gtgcccaagtccatgggcattatcgtccgtaccgccggtattggccgctccacggaagaa
ctccagtgggacctcgactacctggtgcagttctgggaggccattacccaggccgccagc
gagcgcaaggcgcccttcctgatccaccaggaaagcaatgtcatcatccgcgcggtgcgc
gactacctccgccaggacatcggcgaagtgctgatcgacgctccgaccgtccacgaggac
gtactgaactttgttcgcgcggtcatgcccaccttcgagaacaagatcaagctgtacaag
gatgaaattccgctgttcagccgctatcagatcgaaggtcagatcgaaaccgcgttccaa
cgcgaagtaaagttgccctccggcggctccatcgtcatcgacccgaccgaggcactggtg
tccatcgacatcaactcctcccgcgccaccaagggtcacgacatcgaagaaaccgcgctg
cagaccaacctggaagctgcggaagagatcgcgcgccagctccgcctgcgcgacatgggc
ggcctgatcgtgatcgatttcatcgacatgaccccggccaaacaccagcgcgaagtcgag
cagaagatgcgcgaagcgctggaaattgaccgcgcccgggtccaggtcggcaagatctcc
cgttttggcctgctggagatgtcccgccagcgcctgcgtccgtccctgggcgaaacccgc
agcgaggtctgcccccgctgtgagggtcagggcaccatccgcggtatcgagtccctcgcc
ctgagcatcatgcgcctgatttacgaggagtcttccaaagaaaagaccggagaagtacgg
gccatcgtcccggtcgccgttgccaccttcctgctcaacgagaagcgcaagcagctcgct
gacatcgaagcgcgccaggaagtcagcctggtggtcgtgccggcacctcatatggaaaca
ccgcatttcgaaattgtccgtatgcgcgatgacgaaaccggtcccgagcatgtctccagt
tatcaggttgccgaagagtacagtcagcgcgaagaagaggtgtatgaggcaccgactgcc
cagcaaccggtgcgcgaacaggccgcagtgaaagctatccggcccactgccgccccggca
cccacgccggctaaggtaactgccaccgcagcgaacgaccaggaagaaggcctgttccgc
aaactgggccgcaagattgcctgcttcttcaggggtgagagcaccactaccgacaaagag
cagcaacaaaccgcacgcaccgtgcgcgaagaccgtcgcacccaggggcgtcaggatcgc
cgtaaatcccgcgtagcacgggatgatggccgccagggcaaccgcagcggcggtgatcgc
agacagtccggtcagcagcagagccgtggcgacgataaccgtaatcgtagccgtgcccgc
ggtgaggaccaaagccgtggtggccagcagggtcgccagggtgctgatggcaaaggtggc
gacagccgtcgcggaggtcagggccgtggccagggacgcaaccgcccacagcgggatcaa
aaagaccagcgcgaacagaaggaccaaaaagacacccgcgagcagcaggacagcaccgcc
aagagcgcccctgaaaaaggcggtagcgatgacaagcgccgcaaaccgcgtcgcgcccgc
aatcgtgatggctccccggccgaaactccggcatccacgccggcggatcgcaaggcgtct
cgcagcgagcggcaccagaaggacactcagccggaagaacgccaggacacctcccaaccg
gaggtgaaagctgacgccaagcccaaagtcgcggaagcccaggcaccgaaggcggaggat
aaaccttccgagaaagcgaccaaagcagacagtcagactccggccaagacagagaaaaag
ccggaacagcctgaacagaagagcgaatcaaaggctggcgagaaagcccggaacgatggg
gctccagcctcagacaccaaggctgaaacaaaacccgaaagcaagcccgcacggaagcag
ccggagaaaaaggctgagagcaagacagaggacaaagctccgaaagagcccaaggctgaa
agcaaagtcgctgacagcaagccggcagtccccggcgaggctccaaaagccactgaagcg
ccggaaaccgctgcaaagtctggcgaccaggacaagcaggccgctgaggacaaagcgcaa
gcacccaaggccgatgtcgccaagccggagacacctgccgctgacaccaggaccgagccc
aaggctgaacccgctgccgaaaagccggcacccaaggtagaaaaacctgcggcacaaccg
gaaaaacaggaagccaagacggaacctgcacctgcggacaagtcttcagaaaaacctgcg
gaggccgaaaaacagcccgagcccgaggccaaaaagcccgagcccgaggccaaaaagcct
gagccggagactaaacagcccgagccagaaacaaagcagccggagaaagcagccgagcaa
ccgagcgccgataaggccccggaagtaccggtaacgcccggacgtgcctacaatgatccg
agggaagttcgcaaacgtcagcgagctgcggaagaggccaaaaaggccgggagtaactaa
DBGET
integrated database retrieval system