Marinobacter sp. NP-4(2019): EHN06_14115
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Entry
EHN06_14115 CDS
T09527
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
manp
Marinobacter sp. NP-4(2019)
Pathway
manp02020
Two-component system
manp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
manp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EHN06_14115
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EHN06_14115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
manp03021
]
EHN06_14115
Transcription machinery [BR:
manp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EHN06_14115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AZT84587
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All DBs
Position
3105694..3107214
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AA seq
506 aa
AA seq
DB search
MKASLQLKLGQSLTMTPQLQQAIRLLQLSTLDLQQEIQQALDSNPMLETSEDDDTPDANT
SEQDHEESPKSEETASATESTSDWDESENGPDWASENDIPDNIPDDLPVDTAWDDIYQSA
PAPAARNEDENDSDFETRNSPTETLQDHLEWQLNLTPLSERDQAIAHALMDAVDERGYLA
SSIEEIHSGLVDDTEDDPLELDEVEAVLHRLQHFDPPGVFACNLQECLLIQLNQLPPDTP
WLAQARLVITHYINLLGNRDYAQLLRRSRLKEDQLREVLALITSLNPRPGDSVDRAEPDY
VIPDVMVRKHNGRWRVELNPDIAPRIRVNASYASLIKRADSSADNTYLRDQLQEAKWFIK
SLQSRNETLLKVATRIVEHQQGFLDHGEEAMKPLILSDIAQAVEMHESTISRVTTQKYMH
TPRGIFELKYFFSSHVSTDEGGECSSTAIRAMIKKLIAAETPKKPLSDSKIAAMLGEQGI
KVARRTVAKYREAMHIPPSNERKRLV
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcattacagttaaaactgggtcagagcctgaccatgacgccccagttgcag
caggcgatcaggcttctgcaactctctactctcgaccttcagcaggaaatccagcaggct
ctggactccaaccccatgctggaaacctcggaagacgacgataccccggatgccaatacc
tccgagcaggaccacgaagagtccccgaagtccgaggaaaccgcttcggcgacggagtcc
acctccgactgggatgaatccgagaacggtcccgactgggcatcggagaatgacattccc
gataacattccggacgatttgccagtagataccgcctgggatgacatctaccagtcagca
ccggcaccggcggcccgcaatgaagacgagaacgacagcgacttcgaaacccgcaattcc
ccgaccgagacccttcaggaccatctcgaatggcagttgaacctgacccccctgagcgaa
cgggaccaggccatcgcccatgccctgatggacgcagtggatgagcgtggctacctggcc
tcatccatagaggaaatccattccggactggtggacgacaccgaggacgacccgctggaa
ctggacgaagtggaagcagtgctgcaccgactgcagcactttgatccacccggcgtcttt
gcctgcaatctgcaggagtgtctgctgatccagctcaaccagttgccgccggacaccccc
tggctggcccaggcgcgactggtcattacccattacatcaacctgctgggcaaccgggat
tacgcacaactgctgcgccgtagccgcctgaaggaagatcagttgcgggaagtgctggcg
ctgatcaccagtctcaacccacggccgggcgattcggtagaccgggccgaaccggattac
gtcattcccgatgttatggttcgcaagcacaacggccgctggcgagtcgaactcaatccc
gacattgctccccggatccgggtcaatgccagttacgcttccctgatcaagcgcgcggac
agcagcgccgacaacacctacctgagggatcagcttcaggaggcgaaatggttcatcaag
agcctgcaaagccgaaacgaaaccctgctcaaggtggccacacggattgtcgagcatcag
cagggctttctggatcacggcgaagaagcgatgaagccgttgattctgtcggacattgcc
caggccgtggaaatgcacgagtccaccatttcccgggtgaccacccagaaatacatgcat
acaccccgtggcatctttgaattaaagtactttttctcgagccacgtcagtactgatgag
ggtggagagtgttcctccaccgcgatccgtgccatgatcaagaaactgattgcggcagaa
actccgaaaaagccattgagcgatagcaaaattgcagccatgctaggagaacagggtatc
aaggtagccaggcggaccgtagccaaatatcgtgaggctatgcacattccgccttccaat
gaacggaaacggctggtttga
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