Marinobacter sp. NP-4(2019): EHN06_19510
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Entry
EHN06_19510 CDS
T09527
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
manp
Marinobacter sp. NP-4(2019)
Pathway
manp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHN06_19510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manp03019
]
EHN06_19510
03016 Transfer RNA biogenesis [BR:
manp03016
]
EHN06_19510
Enzymes [BR:
manp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EHN06_19510
Messenger RNA biogenesis [BR:
manp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EHN06_19510
Transfer RNA biogenesis [BR:
manp03016
]
Prokaryotic type
tRNA degradation factors
EHN06_19510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
IFT20
Motif
Other DBs
NCBI-ProteinID:
AZT85558
UniProt:
A0A3T0D079
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All DBs
Position
4284324..4286309
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AA seq
661 aa
AA seq
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MLNADALSQLRQLKTDIKENKVVFPGTVKATNGRFGFVALDEGRDVFLPPEEMQKVLPGD
RVKVAEQEGDKGKIQGVVDELLESSLTTFVGRYLIKGKGHFVVPETPGINRWIFIPPKER
MNAEQDDFIYCRIHKHPIKDGKGQAKILKVIGKAGEPGIERSFTLATFDLPDVWPEAVKK
QAEALDEGTIEARSGDREDRTAQPYVTIDSPGTQDMDDALLAEPNATGWKLSIAIADPTA
VIEPGSAAEAEAFNRATAIYFPGEPLPMLPDSLSTRLCSLMPDVKRLALVCDLQVNNDGS
LGEYSFHKAVIQSKGKLSYELVSNLIEGREDDDIKALPDAVANSLDQLHQTATALRKWRS
EHALLSADRPEFRLRLDENKRVRLIEPSVQNEAHRLVEECMVAANRCAADFLSQQPKGLF
IQHPGLRDDRADNIRSLLENHAPELAAVDATSAEGFRDLMKRTEQLDAEVPVKAIISRQL
ARAELTFTAAPHQGMGLPAYTTFTSPLRKFSDFHVHRLIKSILWQEPMGELTEAQLAELQ
TTQIRARQAANSLENWLKSDFAKTLGADPMTGVISRTVPAGFFVRLDVNGLEGFVSCRTL
EGKYGFDPVTLRLIHNKNGRIFQLEQPVTVTFADVDEERKQINFRLVDAEEIARPEEPPK
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgctcaatgccgacgctctcagccagttgcgccagctgaaaaccgacatcaaggaaaac
aaggtggtctttcccggcaccgtcaaagccaccaacggacgtttcggtttcgtagcactg
gatgagggccgggacgtatttctgccaccggaagaaatgcagaaagtgctgcccggtgac
cgcgtcaaggtggccgaacaggaaggcgacaagggcaaaatccagggcgtggtggacgag
ttgctggaaagcagcctgaccaccttcgtcggccgctatctgatcaagggcaaggggcac
tttgtggtgccggaaacccccggtatcaatcgctggatcttcatcccaccgaaagagcgg
atgaacgccgagcaggacgacttcatttactgccgcatccacaaacatccgatcaaggat
ggcaagggccaggccaagatcctcaaagtcattggcaaggctggagagccgggtatagag
cggtcctttactctggccaccttcgacctgccggacgtctggccggaagcggtaaagaaa
caggcggaagccctggacgaaggcaccattgaagccaggtccggtgatcgcgaagatcgc
accgcccagccttatgtcaccatcgacagcccgggcacccaggatatggacgacgccctg
ctggcggaacccaatgccaccggctggaagctgtccatcgccattgccgaccccaccgcg
gtcattgagccgggcagtgccgccgaagccgaggcctttaaccgggccaccgcgatctat
ttccccggtgagcccctgccgatgctgccggacagcctcagcacccggctgtgctcgctg
atgccggacgtcaagcgcctggcgctggtgtgcgacctgcaggtcaacaacgatggcagc
ctgggcgagtacagcttccataaggcagtgatccagtccaagggaaaactcagctatgag
ctggtatccaacctgatcgagggtcgagaagacgacgacatcaaggctctgcccgacgcc
gtcgccaacagcctcgaccagttgcaccagaccgccaccgccctgcgcaaatggcgcagc
gagcacgcgctgctgagcgcggatcgccctgaattccgcctgcgtctggacgaaaacaag
cgggtgcggctgatcgaaccctcggttcagaacgaggctcatcgattggtcgaagaatgc
atggtggccgccaaccgctgtgccgcggatttcctcagccagcagcccaagggactgttt
atccagcaccccggcctgcgtgatgatcgggcagacaacatccgctccctcctcgaaaac
catgccccggagctggccgctgtcgatgcaacctccgccgagggcttccgcgatttgatg
aaacgcacggagcaactggacgccgaggtcccggtcaaggcgatcatctcccgccagctg
gcacgagcggaactgacgttcacagccgcccctcaccagggtatgggtctaccggcttac
accaccttcacgtcgcccctgcgcaaattcagtgatttccatgtgcatcgactgatcaaa
tcgattctgtggcaggaacccatgggcgaattgaccgaagcgcaactggctgaattgcag
actacccagatccgtgcccgtcaggccgcaaacagcctggaaaactggctcaagagcgat
ttcgccaagaccctcggggccgaccccatgaccggtgttatcagccgtaccgtgcccgcc
ggattttttgttcgcctggacgtcaacggcctggaaggctttgtcagctgtcgtaccctg
gaaggcaagtacggctttgatccggtcaccctgcgactcatccacaacaagaacggccgc
atcttccagttggaacagccggtcaccgtgacctttgcggacgtggacgaggaacgcaag
cagatcaatttcaggctggtggacgccgaagaaatcgcccggccagaggaaccgccgaag
ggttga
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