Marinobacter sp. NP-4(2019): EHN06_19795
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Entry
EHN06_19795 CDS
T09527
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
manp
Marinobacter sp. NP-4(2019)
Pathway
manp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHN06_19795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manp03019
]
EHN06_19795
Enzymes [BR:
manp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EHN06_19795
Messenger RNA biogenesis [BR:
manp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EHN06_19795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
CMS1
HEM4
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AZT85610
UniProt:
A0A3T0CYF9
LinkDB
All DBs
Position
complement(4351765..4353090)
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AA seq
441 aa
AA seq
DB search
MSFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL
QRLAENPRTGKGPRALILAPTRELAAQVHDSVNLYSKYIPTKAAVVFGGVKINPQMMKLR
KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN
LLFSATFSNEIRTLAQGLLDNPVQVEVAARNTTAEKVKQSIYPVDQSQKTALLSKLVRDN
GWEQVLVFTRTKHGANRLTQKLERDGITAAAIHGNKSQGARTRALADFKQGDVRVLVATD
IAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKMLAGIERL
IKKQLPRKSVEGFEPTNNLPLKPKAKADPSRARNRNGNGGGNGKPGGNPRSFGGKPGGRS
GGRSQNSGGGQGRRSPARESA
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcttcactcggtttgtccgagcagctggtccgtgccacgtccgatcagggt
tatgaaaccccgtcccccatccaggcccaggctattcctgcggtgctgtccggcaaggac
gtgatggctgcggcccagaccggcaccggaaaaaccgccggtttcaccctgccgctgttg
cagcgcctggctgaaaacccgcgtaccggtaaaggcccccgcgccctgatcctggcgccg
acccgggaactggccgcacaggtccatgacagcgtgaacctgtacagcaaatacattcct
accaaggccgccgtggtcttcggtggtgtaaaaatcaatccgcagatgatgaagctgcgc
aaggggctggacgtactggtggccacaccgggtcgcctgatggacctgtaccagcagaac
gccgttcgcttcaacgaagtggaaatcctggtgctggacgaagccgaccgcatgctggac
atgggctttatccgcgacatccgcaagattcttgcgttgctgccggccaagcgccagaac
ctgttgttctccgcgaccttttccaacgagatccgcaccctggctcagggcttgctggat
aacccggttcaggtggaagtcgcagcacgcaacactacagcggaaaaggtgaagcaatcc
atctatccggtggaccagagccagaagaccgctttgctgagtaagctggttcgggacaac
ggctgggaacaggtgctggtctttacccgtaccaagcacggtgccaaccgcctgacccag
aaactggaacgggacggcattactgctgccgccatccacggcaacaagtcacagggtgcc
cgtacccgtgccttggccgatttcaaacagggtgatgtacgcgtgctggtggctacggac
attgccgcccgtggtctcgacatcaaacagttgccacaggtggtgaactttgagctgcct
aacgtgccggaagattacgtgcaccgcatcggccggaccggtcgcgcaggtgagagcggc
catgcgctgtctctggtgagtgcggacgagggcaaaatgctggcgggtatcgaaaggctg
atcaagaaacagctgccgcgcaagagcgtggaaggctttgagccgacaaacaacctgcca
ctgaaaccgaaagccaaggccgatccgagccgtgcccgtaaccgcaatggtaacggcggt
ggcaacggaaaacccggaggaaaccctcgcagcttcggtggtaagccgggcggtcgcagt
ggtggccgcagccagaatagcggcggtggtcagggccggcgttcaccggctcgtgagagc
gcgtaa
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