KEGG   Methanomicrobium antiquum: L1994_01470
Entry
L1994_01470       CDS       T08973                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
manq  Methanomicrobium antiquum
Pathway
manq03030  DNA replication
manq03410  Base excision repair
manq03420  Nucleotide excision repair
manq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:manq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    L1994_01470
   03410 Base excision repair
    L1994_01470
   03420 Nucleotide excision repair
    L1994_01470
   03430 Mismatch repair
    L1994_01470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:manq03032]
    L1994_01470
   03400 DNA repair and recombination proteins [BR:manq03400]
    L1994_01470
Enzymes [BR:manq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     L1994_01470
    6.5.1.6  DNA ligase (ATP or NAD+)
     L1994_01470
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     L1994_01470
DNA replication proteins [BR:manq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    L1994_01470
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     L1994_01470
DNA repair and recombination proteins [BR:manq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     L1994_01470
   NER (nucleotide excision repair)
    Other NER factors
     L1994_01470
   MMR (mismatch excision repair)
    Other MMR factors
     L1994_01470
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: WFN37093
UniProt: A0AAF0JU16
LinkDB
Position
complement(311285..312919)
AA seq 544 aa
MLFNEFSEICENIEETSGRLDSIDIIAGVLPGLSVEELPVFVRFLMGRIFPDYSPEKIGI
GPNLVYEAVAYVVGRNRDAVIKKINSGGDAGRAIENLLAKKEQTSFFSESLDLLEVFRDF
HYISGVLGNSSQKEKLKVLKRLFSNANPKEARYISRLILGELRIGVGEGNIRDAIAKAFS
VSSNAVEHAYQASNDLGNVAVLAGKGEVALWKVKVELFRPVKMMLAKQGTIADMIAENGH
IAAEYKYDGTRFQFHKKGNECRIYSRKLEDVTNAIPDVAEMLINASEHDIILDGEVIAVD
GERPLPFQYVLRRFRRKHDIASHVESIKLVPNIFDIISIDNETLIDEPFSKRREILEESI
ESYVAPQIVSDDIDYIESFYKKALEDGHEGIMVKSLTAHYTPGVRGKEWIKIKPAVDTID
LAVIGAEWGEGKRAKMFGSFLLACQDETGTLLPVSKVATGISDEMLSVLYSLLKDSVILE
AKNTVSFEPELVFEVGYAEIQKSPTYKAGYALRFPRFIRLRDDKRIDEIETISSIEERFK
NQSS
NT seq 1635 nt   +upstreamnt  +downstreamnt
atgctttttaacgaattttcagagatctgtgaaaacatagaggagacatcaggaaggctt
gactcaatagacataatcgcaggagtgcttcccggcttaagcgtggaggaactgcctgtt
tttgtcagatttttaatgggcagaattttcccggattatagtccggaaaagattggaatc
gggcctaatcttgtttatgaggcggtcgcatatgttgtcgggcgaaacagagacgccgtt
attaaaaaaattaactccggtggtgacgcaggacgggcaattgaaaaccttcttgcaaag
aaagaacagacatcatttttctccgagtctttggatcttttggaagtcttcagagacttt
cactacatatcaggggttttgggaaacagctcgcaaaaagagaagctcaaagtcttaaag
agattgttttcaaatgcaaatccaaaagaggcaaggtatatatcaagactaatattagga
gagcttcgaatcggagttggtgagggaaacataagagatgcaattgcaaaagctttttca
gtttcttcaaatgcggtagaacacgcatatcaggcatcaaatgatctgggaaacgttgca
gttcttgcaggaaaaggcgaggtggctttgtggaaggtcaaagtagaactcttccggcct
gtcaaaatgatgcttgcaaaacagggcacaattgcagatatgatcgcagaaaacggacat
attgccgcagaatacaaatatgacggaacaagatttcagtttcacaaaaagggaaatgag
tgcaggatttactcaagaaaacttgaggatgtaaccaatgcaatcccggatgttgctgaa
atgctaattaacgcatcagaacacgacataattcttgacggagaagtaattgcagttgac
ggtgaaagaccacttccgtttcagtacgttttaagaagatttcgcaggaagcatgatatt
gcaagccatgttgaaagcataaagcttgttccaaacatatttgacattatttcaattgat
aatgaaacactgatagatgaacccttctcaaaaagaagagaaatcctcgaagagtcaatt
gaaagctatgttgcaccgcagattgtctcagacgatattgattatattgaatcattctac
aaaaaggcattagaagacgggcatgaaggaataatggttaagtctttaactgcacattac
actccgggtgttcgcggaaaggaatggattaagataaaacccgctgttgatacaatagac
ttagcagtaatcggtgccgaatggggagaaggaaaaagagctaagatgtttggatcgttt
cttcttgcatgtcaggatgagaccggcacattacttcctgtctcaaaggttgcaacggga
atttcagatgagatgctctcagtattatacagtcttttaaaagactcggtcatattagag
gcgaaaaacacagtttcttttgaaccggagttagtatttgaagtgggatatgccgagatt
caaaaaagccctacatacaaggcaggctatgcccttcgattcccaagattcatcaggctt
cgtgatgacaaaagaatagatgaaattgagactatatcttcaattgaagaaaggttcaaa
aaccagtcttcctga

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