Methanomicrobium antiquum: L1994_04470
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Entry
L1994_04470 CDS
T08973
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
manq
Methanomicrobium antiquum
Brite
KEGG Orthology (KO) [BR:
manq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
manq03016
]
L1994_04470
Enzymes [BR:
manq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
L1994_04470
Transfer RNA biogenesis [BR:
manq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
L1994_04470
Prokaryotic type
tRNA splicing ligases
L1994_04470
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WFN37965
UniProt:
A0AAF0FQP4
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All DBs
Position
901817..903232
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AA seq
471 aa
AA seq
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MINEVEWEIKKGFVPDMRVPGRFFLSEKLCETLEEGALNQLANVATLPGIIKNSLAMPDI
HWGYGFPIGGVAAFDMDEGVISPGGVGFDINCGVRLIKTPLDVSEIGKIKRLITELFHTV
PTGVGTKAEKKFSSGELDEIMLGGAGWVVGEGYGTKEDLIRCESNGCMKEAGTEHISTKA
RQRGMPQCGTLGSGNHFLEIQTVKEIMDEEAASAFGVSKDDVCIMIHCGSRGLGHQVCTD
HLKSIEAATKKYKIKIPDGQLACAPVKSPEGRAYYEAMAASANYAWANRQLITHMVREIF
TKIYKVEYEELKLVYDVSHNVAKYEEHVVDGIKKTVCVHRKGATRAFGPNCHDIPSDIAN
IGQPVLIPGSMGTSSYLLKGTMTAMEKTFGSTCHGSGRIYSRSKAKKDLSGLKIKEDLEK
RGIYVKATSNNVIAEEAPVAYKSSSEVVNVVHRAGLSLEVARLEPLGVIKG
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgataaatgaggttgaatgggagattaagaagggatttgttcctgatatgcgagttccc
ggaagattttttttatcagaaaagctttgtgaaacgcttgaagaaggagctttaaatcag
cttgcaaacgttgccacacttccgggaattattaaaaattcccttgctatgcctgacatt
cactgggggtatggttttccgataggaggtgttgcggcctttgatatggatgagggagta
atctctcccggaggagtaggatttgacataaactgcggagtaagattgataaaaactcct
ttggatgtatctgaaatcggtaagataaagcggcttataacagagctgtttcatactgtt
ccaactggtgttggaacaaaagctgaaaaaaaattcagctccggcgaacttgatgagata
atgcttggtggcgcaggatgggttgtcggtgaaggatatggaacaaaagaggatttgatc
cggtgtgagagtaacgggtgcatgaaagaggctggcacagaacacataagcacaaaagcc
aggcaacgtggtatgccgcaatgcggaacacttggatcaggcaaccatttccttgaaata
cagactgtaaaagagataatggatgaggaggcggcatctgcgtttggagtttcaaaagat
gatgtctgtattatgatacactgtggttcaagaggccttgggcatcaggtatgcaccgat
catctgaaaagtatcgaagccgcaacaaaaaaatacaagattaaaatacctgacggacaa
cttgcatgtgcacctgttaaaagtcctgaaggaagggcatattatgaggcaatggccgca
tcagccaattatgcatgggcaaacagacagttaattactcatatggtaagggagattttc
actaaaatatacaaggtggaatacgaagagctaaagcttgtatatgatgtttcccataat
gttgcaaaatatgaagagcatgttgttgacgggattaagaaaacagtatgtgtgcacaga
aaaggtgccacacgtgcgtttggtcccaactgtcatgatattccgtctgatattgcaaat
atcggccagccggtgctaatcccggggagcatggggacttcatcttatcttctcaaagga
acaatgactgcaatggaaaaaacatttggcagcacctgccatggttcaggaagaatttat
tcaagatcaaaagccaaaaaagatctaagtggtcttaaaataaaagaagatcttgaaaaa
agaggcatttatgttaaagccacaagcaacaatgtaattgcagaagaagcaccggtcgca
tacaaatcaagcagtgaagtggtaaatgtggtgcacagagcaggattatcattggaagtt
gcaaggcttgagcctctgggagtgataaaaggatga
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