Methanomicrobium antiquum: L1994_07765
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Entry
L1994_07765 CDS
T08973
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
manq
Methanomicrobium antiquum
Pathway
manq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L1994_07765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manq03019
]
L1994_07765
Messenger RNA biogenesis [BR:
manq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L1994_07765
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
WFN36043
UniProt:
A0AAF0JT97
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All DBs
Position
1559658..1561004
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AA seq
448 aa
AA seq
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MDVEIIAVGGYNEVGRNMTAVRYGKEIVIFDMGLRLDQIMIHEDAEVENMHSLDLIEMKA
IPDDTIMNTVEGSVKAIVCTHGHLDHIGAIPKLAHRYNAPIIGTPYTAKLIEQQIEGEKK
FGVSNKVFALNAGSKYRYEISKDLSLEFVNVQHSIIDTAMAVLHTPAGIIVYANDFKLDR
TPVLGNPPDFARMRELGREGVLALIIESTNVRLPGRCPSERIAQKLVRDAMTSYEDDKSA
IIVSTFSSHIARVKTIAECAHEIGRKPVLLGRSMEKYSSTAEQLKQVSFPETLSMFGNRK
TVDRTIRRIMKEGKDKYVPIVTGHQGEPGAILTRLAAGNTPYRLDKGDKVMYSANIIPNP
MNFGQRYHQETLLRMKGARIFEGLHVSGHAQREDHYEILNLLNPQHIIPSHGDVDMTGEY
MKLAVECGYTLGNDVHILRNGMRLCVTK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggatgtagagataattgctgtaggcggttataacgaagtcggcagaaatatgactgct
gtccgctatggcaaggaaattgtaatatttgatatgggtctcaggcttgaccagataatg
atccatgaagatgccgaagtagagaatatgcattctcttgatcttatcgagatgaaggca
atccctgatgatacaataatgaacactgtcgaaggcagtgtcaaggcgattgtatgtaca
cacggacatctggatcacattggtgcaataccaaagcttgcccacagatacaatgcacca
attattggaacaccttatacagcaaagttaattgaacagcagattgaaggtgagaaaaaa
tttggagtttccaataaggtttttgccctaaatgcaggctcaaaatacagatatgaaata
tcaaaggacttaagtcttgaatttgtaaacgttcagcactcaatcatagatactgcaatg
gcagttcttcacactccggcaggaatcattgtttatgcaaacgattttaagcttgacaga
acacctgttcttggaaaccctccggattttgcacgtatgcgtgaacttggacgtgaaggt
gttttagcacttatcattgagagtacaaacgtcaggcttccgggaagatgtccaagtgaa
agaattgcacaaaaacttgtccgcgatgcaatgacaagttatgaagatgataaaagtgca
ataatagtaagcacgttttcatcacatattgcacgagttaagacaattgccgaatgtgca
cacgagattggaagaaagcctgtacttcttggaagatcgatggagaagtattcttcaaca
gcagaacagctaaaacaggtcagtttcccagagacattgtcaatgtttggaaaccgaaag
actgtagacaggacaatccgccgtatcatgaaagaaggaaaggataaatatgtccctatt
gtaaccggacatcagggagaaccaggtgctattctgacacgacttgcggcaggaaacact
ccatatcgccttgacaagggtgacaaagtgatgtacagtgcaaacattattccaaatcca
atgaacttcgggcagaggtatcatcaggaaacacttctcaggatgaagggtgcacgcata
tttgaaggtcttcatgtaagtggtcatgcccaaagagaagatcactacgagatactaaat
ctgttaaatccacagcatatcattccctcacacggagatgttgatatgacaggtgaatac
atgaagcttgcagtagaatgtggatatactcttggaaatgatgtacatatcctaagaaac
ggaatgagactttgcgtaacaaaataa
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