Methanomicrobium antiquum: L1994_08210
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Entry
L1994_08210 CDS
T08973
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
manq
Methanomicrobium antiquum
Pathway
manq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L1994_08210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manq03019
]
L1994_08210
03009 Ribosome biogenesis [BR:
manq03009
]
L1994_08210
Enzymes [BR:
manq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L1994_08210
Messenger RNA biogenesis [BR:
manq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L1994_08210
Ribosome biogenesis [BR:
manq03009
]
Prokaryotic type
rRNA helicases
L1994_08210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WFN36127
UniProt:
A0AAF0FM76
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All DBs
Position
complement(1662545..1664152)
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AA seq
535 aa
AA seq
DB search
MDSFLKFSELNISEEILKAIEDMGFEEPTPIQQLSIPLIMNGRDVTGQAQTGTGKTAAFA
IPVIEKIDVKKSNVQAIILSPTRELTIQIAEEFNRLLKYRDDIRVLPIYGGQPIERQISV
LNRGVQIVVGTPGRVMDHLKRRTLVLSSVETIVLDEADQMLDMGFKEDLEEILAYAPEKR
QTILFSATMPKPIIKISKAFQKNPEFLKLNPTELTVPLIEQSYIETRERDKLDILCRLID
INGPGLSMIFCNTKRRVDELSSSLHSRGYFAEGLHGDMKQALRDRVMGKFRGGSLDILIA
TDVAARGIDVDDIDTVYNYDVPQDVEYYVHRIGRTGRAGKTGRAYTFVGPRETEKLRMIQ
RLAKVKIRRVSPPSTKDVENCRLERFLDKIRNLMAESDLTAYISAVEKLMDEDFPLTDIS
AALMKLHMEGDGRESSQSSQKETSADFSNTGGEPGMVRFFINIGKAKGIRPGDIVGAIAG
ETKIQGNLIGAISIFNDFSFVEVPENNAADVYRVMNNSTIRGHEISLEPARKANR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggattcttttttaaaatttagtgagcttaatatttctgaagaaatacttaaagcaatt
gaagatatgggttttgaggaacccacaccaatacaacagctttcaatacctctcattatg
aatggccgagatgttacaggccaggcccagacaggtaccgggaagactgcagcatttgcg
atacctgtgattgaaaagatagatgtcaaaaaaagcaatgttcaggcaataatcctttca
ccaacaagagaattaacaatccagatagcagaagagttcaacagacttctgaaataccgt
gatgatataagagtgcttccaatctatggaggacaaccaatcgaaaggcagatctctgtt
cttaatcgtggagtccagattgttgtgggaacacctggaagggttatggatcacctcaag
agaagaacactggttctctcatcggttgagacaattgtcttggatgaagctgatcagatg
cttgatatgggctttaaggaggatcttgaagaaattcttgcatatgctccggagaagcgc
cagactattttgttctctgccacaatgcctaaaccaatcatcaaaatttcaaaagcattc
cagaaaaatcctgaatttttgaagcttaatcctacagaacttactgttcctttaattgag
cagtcatatattgaaacccgcgagagagataagctcgatattttgtgccgtttaattgat
atcaatggtcccggtctttcaatgatcttttgtaatacaaaaaggcgtgttgatgaactt
tcatcttcacttcattcaagaggatattttgcagaaggtcttcatggcgatatgaagcag
gctttaagagaccgcgttatgggaaagttcaggggaggctctctggatattttaatcgca
accgatgtcgcggcaagaggcattgatgttgatgacattgatactgtctataactatgac
gttccacaggatgtggaatattatgtgcacagaattggccgtacaggccgtgcaggaaag
acaggtcgtgcttacacttttgtcgggccacgtgagacagaaaagcttcgtatgattcag
aggcttgcaaaagtcaaaatcagacgagtttcacctccaagcacaaaggatgtagaaaat
tgtcgccttgagcgcttccttgacaaaatcaggaatcttatggctgaaagcgatctgact
gcctacatatcagcagtagaaaaattaatggatgaagatttcccactgacagatatttcc
gccgcgcttatgaagcttcacatggaaggagatgggagagaatcgtcacagtcttcacag
aaagaaacttcagctgatttctcaaataccggcggagagccgggaatggtccggtttttc
ataaacattggcaaagcaaaaggtattcgtccgggcgatattgtcggtgcgattgcagga
gagaccaagattcagggaaatcttattggtgcaatcagtatttttaatgacttttcattt
gttgaagtgcctgaaaacaatgcggcagatgtttacagggtaatgaacaattcaacaatt
cgcggacacgaaatttctttagagcctgcaagaaaagccaacaggtaa
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