Marisediminicola antarctica: BHD05_03435
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Entry
BHD05_03435 CDS
T06401
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mant
Marisediminicola antarctica
Pathway
mant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHD05_03435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mant03019
]
BHD05_03435
03400 DNA repair and recombination proteins [BR:
mant03400
]
BHD05_03435
Enzymes [BR:
mant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BHD05_03435
Messenger RNA biogenesis [BR:
mant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BHD05_03435
DNA repair and recombination proteins [BR:
mant03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BHD05_03435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
RcpC
DUF8096
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
QHO68831
UniProt:
A0A7L5AI86
LinkDB
All DBs
Position
731075..733201
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AA seq
708 aa
AA seq
DB search
MTDTRASALEILRTLVGRDDAAFHEGQFEAIETLVDDRRRALVVQRTGWGKSAVYFVATL
LLRQQGAGPTILVSPLLALMRDQIAAAARAGVRAVAINSTNAHEWGDVLRQLAADEVDVL
LVSPERLNNPSFREQQLPQLIPRVGMLVVDEAHCISDWGHDFRPDYRRLRDLIAQMPAGV
PVLATTATANSRVVQDVAEQLGALAPGAEHTDVVTIRGPLARASLRLGVLRLPDAGARLG
WLLSHLDDLPGSGIIYTLTVAAAEDTARLLREAGHVVRAYTGQTDTGEREESEGLLKANQ
VKALIATSALGMGFDKPDLGFVLHLGAPSSPVAYYQQVGRAGRATANADVLLLPGTEDEA
IWQYFATASMPNQQRAETVIDELNANGGAPLSTPALEARVNIRRTPLELLLKVLDVDGAV
KRVQGGWVATGQPWTYDRERYERIAGERIAEQQHMIEYEQTDGCRMEYLQRSLDDDTAVP
CGRCDNCAGAWYPVDVQDEQAAKAASSLDRVGVIIEPRAQWPTGADRLGVPAKGKIAPGE
RMLDGRALARLTDLGWGGTLRAVFSPSNIDAPASPQLIAACIRVLGEWGWDERPAAVVSM
PSRSHPLLVGSVATALAEVGRLPYLGSLDIVGDGPVGEPGGNSAYRLQSVWGGFAVGGEL
ASALSALSGPVLLVDDLVDSRWTLTVAARILRQGGAAGVLPFALGVRG
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacccgcgcatccgccctcgagatcctgcgcacgctcgtcgggcgtgacgac
gccgcctttcacgagggccagttcgaggccatcgagacgctcgttgacgaccgccggcgc
gcgctcgtcgtgcagcgcaccgggtggggcaagtcggcggtgtacttcgtcgccacgctg
ctgctgcgccagcagggcgcgggcccgactatcctcgtctcgccgttgctcgccctgatg
cgcgaccagatcgccgcggcggcccgcgccggggtgcgcgcggtcgcgatcaactcgacc
aatgcgcacgagtggggcgacgtgctgcggcagctcgccgccgacgaggtcgacgtgctg
ctcgtctcgccggagcggctcaacaatccgtcgttccgggagcagcagctgccgcagctg
atcccgcgggtcggcatgctcgtcgtcgacgaggcgcactgcatctccgactgggggcac
gacttccggcccgactaccggcgcctgcgcgacctcatcgcgcagatgccggccggtgtg
cccgtgctcgcgacgaccgcgaccgccaacagccgggtcgtgcaggatgtcgcggagcag
ctcggcgcgctcgctcccggggccgagcacaccgacgtcgtgacgattcgcgggccgctc
gcccgggcatccctccggctgggcgtgctgcggctgccggatgccggcgcccggctcggc
tggctgctcagccacctcgacgacctgcccggcagcggcatcatctacaccctcaccgtc
gccgccgccgaagacacggcccgcctgctgcgcgaggccggacacgtcgtgcgcgcctac
accgggcagaccgacaccggcgagcgggaggagtcggaggggctgctcaaggccaaccag
gtgaaggcgctcatcgccacgagcgcgctcggcatgggcttcgacaagcccgacctcggc
ttcgtgctgcacctcggcgcgccgtcctctcccgtcgcctactaccagcaggtgggtcgc
gccggccgcgccaccgcgaacgccgacgtgctgctgctgccgggcaccgaggacgaggcg
atctggcagtacttcgcaaccgcgtcgatgcccaaccagcagcgcgccgaaaccgtcatc
gacgagctcaacgcgaacggcggcgcgcccctctcgacgcccgcgctcgaggcgcgcgtg
aacatccgccgcaccccgctcgagctgctgctcaaggtgctcgacgtcgacggcgccgtc
aagcgggtgcagggcggctgggtcgcgaccggccagccgtggacctacgatcgcgaacgc
tacgaacgcatcgcgggcgagcggatcgccgagcagcagcacatgatcgagtacgagcag
accgacggatgccgcatggagtacctgcagcgctcgctcgacgacgacaccgctgtgccc
tgcgggcgctgcgacaactgcgccggcgcatggtaccccgtcgatgtgcaggacgagcag
gcggcgaaggcggcatcctccctcgaccgcgtcggcgtgatcatcgagccgcgcgcgcag
tggcccaccggagcagaccgcctcggcgtgcccgcgaagggcaagatcgcgccgggcgag
cggatgctggatggccgcgccctcgcccgcctcaccgacctcggctggggcggcaccctg
cgcgccgtgttctccccgtcgaacatcgacgctccggcatccccgcagctcatcgccgcg
tgcatccgggtgctcggcgaatggggctgggacgaacgccctgccgcggtcgtctcgatg
ccgtcgcggtcgcatccgctgctcgtcggatccgttgcgacagcgctcgccgaagttggc
cggctgccctacctcgggtcgctcgacatcgtcggcgacggcccggtcggcgagcccggc
ggaaacagcgcgtaccggctgcagagcgtctggggtggcttcgccgtgggcggggagctc
gcgtcggcgctgtcggcgctgtcggggccggtgctgctggtcgatgacctcgtcgacagt
cgctggacgctcaccgtcgcggctcgaattttgcgccagggcggggccgcgggagtgctg
ccgttcgcgctgggagtgcgcgggtag
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