Marisediminicola antarctica: BHD05_05900
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Entry
BHD05_05900 CDS
T06401
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mant
Marisediminicola antarctica
Pathway
mant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHD05_05900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mant03019
]
BHD05_05900
Messenger RNA biogenesis [BR:
mant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BHD05_05900
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QHO71009
UniProt:
A0A7L5ARK8
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Position
1241974..1243659
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AA seq
561 aa
AA seq
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MNHHHLDLPSPPKLPKGGLRVTPLGGLGEIGRNMTVFEHQGKLLIVDCGVLFPEDNQPGI
NVILPDFSSIRHRLNDIVAIVLTHGHEDHIGGVPYLIKERKNIPVVGSKLTLAFVGAKFQ
EERLSPPVVEVVAGEKRSFGPFDLEFVAVNHSIPDGLAIAIRTEAGLVLHTGDFKMDQFP
LDKRITDLGAFARLAEEGVDLFLTDSTNAEVPGFTTSEEDIRPAIDAVFRTSPRRIVVSS
FASHVHRIQQVLDAAVKNDRKVAFVGRSMVRNMGIASDLGYLNVPKGLVVDLKTLEKLPD
DKMVLVCTGSQGEPMAALSRMANREHIIEIGDGDTVLLASSLIPGNENAIYRVINGLIRW
GANVVHKGNAKVHVSGHASAGELVYCYNIVKPRNVMPVHGEWRHLTANAELAVRTGVPED
RVIIAEDGVVVDLVNGRASIVGKVKADLVFVDGMSIGVASEEALSDRRMLAEDGAITILG
ILDTKTGLLAEPIEFFARGFAHDDEWIRGATKAIDDAIVSANQSKRVDGAALEVLLTRTM
NRWMQRKYRRTPVITSIVVDA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atcaaccaccaccacctcgacctgccgtcaccgccgaagctgcccaagggaggcctgcgg
gtcaccccgctcggcggactcggcgagatcggtcggaacatgaccgtgttcgagcaccag
ggcaagctcctcatcgtcgactgcggcgtgctgttccccgaggacaaccagcccggcatc
aacgtgatcctgcccgacttcagctcgatccggcaccgcctgaacgacatcgtcgcgatc
gtgctcacccacggccatgaggaccacatcggcggagtgccgtatctcatcaaggaacgc
aagaacattcccgtggtgggttccaagctcaccctcgccttcgtcggcgcgaagttccag
gaggagcgcctgtcaccccccgtcgtcgaggtcgtcgcgggcgagaagcgctcattcggc
ccgttcgacctcgagttcgtcgccgtgaaccactccatccccgacgggctcgccatcgcg
atccgcaccgaggccggcctcgtcctgcacaccggcgacttcaagatggaccagttcccc
ctcgacaagcgcatcaccgacctcggtgccttcgcccgcctcgccgaggagggcgtcgac
ctcttcctcaccgactcgaccaacgccgaggttcccggattcacgacctcggaagaggac
atccgcccggcgatcgacgcggtgttccgcacctcgccgcgacgcatcgtcgtgtcgagc
ttcgcgagccacgtgcaccggatccagcaggtgctggatgccgccgtcaagaacgaccgc
aaggtcgcgttcgtcggccggtcgatggtgcgcaacatggggatcgcctccgacctcggc
tacctcaacgttcccaagggcctcgtcgtcgacctcaagaccctcgagaagctccccgat
gacaagatggtgctcgtctgcaccggctcgcagggcgagccgatggcggccctgtcgcgc
atggccaaccgcgagcacatcatcgagatcggcgacggcgacaccgtgctgctcgcgagc
tcgctcatccccggcaacgagaacgcgatctaccgcgtcatcaacggactcatccgctgg
ggcgcgaacgtcgtgcacaagggcaacgcgaaggtgcacgtctcgggccacgcgagcgcc
ggcgagctcgtctactgctacaacatcgtcaagccccgcaacgtcatgcccgtgcacggc
gaatggcgccacctcacggcgaatgccgagctcgctgtgcgcaccggcgttccggaggac
cgcgtgatcatcgcggaagacggcgtcgtcgtcgacctcgtgaacggccgcgcgtcgatc
gtcggcaaggtcaaggcggacctcgtgttcgtcgatggcatgtcgatcggcgtggcctcc
gaggaggcgctgagcgaccgtcggatgctcgccgaagacggcgcgatcacgatcctcggc
atcctcgacaccaagacgggcctgctcgccgagcccatcgagttcttcgcgcgcggcttc
gcgcacgatgacgagtggatccgcggcgcgacgaaggcgatcgacgacgcgatagtgtcg
gcgaaccagagcaagcgagtggacggcgcggcgctcgaggtgctgctgacccgcacgatg
aaccgttggatgcagcgcaagtaccgccgcacgcccgtgatcacgtcgatcgtcgtcgac
gcctga
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