Marisediminicola antarctica: BHD05_05920
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Entry
BHD05_05920 CDS
T06401
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mant
Marisediminicola antarctica
Brite
KEGG Orthology (KO) [BR:
mant00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mant03019
]
BHD05_05920
Enzymes [BR:
mant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BHD05_05920
Messenger RNA biogenesis [BR:
mant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BHD05_05920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
AAA_30
nSTAND3
SLFN-g3_helicase
NACHT
PhoH
AAA_16
ResIII
ABC_tran
Zeta_toxin
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QHO69252
UniProt:
A0A7L5AGX7
LinkDB
All DBs
Position
complement(1247618..1251466)
Genome browser
AA seq
1282 aa
AA seq
DB search
MPEAPLLVITYPPELPVSQRREEISRAIRDNQVVIVAGETGSGKTTQLPKILLELGREKI
GHTQPRRIAARTIAERIAEELGQELGGIVGYQVRFTDRVGKDTKVKLMTDGILLAEIHRD
RELTKYDTIIIDEAHERSLTVDFLLGYLKQLLPRRPDLKVIITSATIDPVSFSKHFDDAP
IIEVSGRTFPVEVRYRPLVPDAIDAAALGSGDEFSDEFEPADARGGKNARKGTTASEDLD
PIDGINAAIDELARESMGDVLVFLSGEAEIRDAEDAIRGRNLPHTEVLPLYGRLSAADQH
KVFRPSGTPGTRRRIILATNVAETSLTVPGIRYVVDAGMARISRYSVRAKVQRLPIEAIS
QASANQRSGRSGRTSDGIAIRLYSEQDFARRPEYTEPEILRTNLAAVILQMISLGLGDIA
AFPFLQPPDSRGIKDGLDLLRELGAVTSDNRITKVGRQLAQLPIDPRLGRMVVESKQHGT
TREVMAIVAALSIQDPRERPLERRAQADQQHARFTDPTSDFLTLLNIWNYLKEKESELSS
SAFRRLCKAEYLNFLRIREWGDVYRQLQRMAKPLQLSINDPSVNPVGIHKSLLAGLLSQI
GIKDRQKKDYVGARQVRFLIFPGSALAKKQPDAVMSAELVETSRLFARVSAAIDPAWAEP
LAGDLAKRSYGEPHWEKKQGQVVAYERVTLYGVPIVERRRVQFSRIDPAYARELFIRHAL
VESDWETDRLDKRVTAFERDNRALRKELAEREERTRRRDILVDDETVFEFYHRRIPSDVY
STRSFESWWKKARLETPDLLTMTAENLIDEDEAEAGIDENEFPTWWDQGDQRLGLSYRFE
PGAEDDGVTVKIPLALVARLSPAGFDWQVPGLREELVTALIKSLPKAIRRNVVPAAEWAR
RLLENARGLPIEELEGTPITAYLADMIQRKTHTPVDPGDFDPERVAPHLRITFAVVDDRG
TQVARAKDLPTLQHKLKSRVRESVAKVTEATPHALERSALVTWDFDELPKVVDTRRGGTV
IRGYPTLVDEGQSVALRVMATTEDQAAALPGGIRRLLLLAIPSPLSWVRDHLSQTEKLTL
ASSPYQNVQALFDDCLVAVMDDALREMAPGGLLWTRTEYEAARAAISAGLIDSLYGVVSV
VTSSLAAARDAERAITKTTSMTLLPALTDVRAQIAALIYPGFISATGVTQLKHLPRYLRA
VSARLDKLPTAVAQDRVSQNEVARAMERFVAAGGRIPLPPDAPERLVRVRWLLEELRVSL
FAQQLRTAEPVSLQRIVKALAP
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaagcgcccctcctcgtcatcacctatccgcccgagctgcccgtcagccagcgc
cgggaggagatctcccgcgccatccgcgacaaccaggtggtcatcgtcgccggcgagacc
ggctcgggcaagacgacccagctgccaaaaatcctgcttgagctgggccgggagaagatc
gggcacacgcagccccggaggatcgccgcgcgcacgatcgccgagcggatcgccgaggag
ctcggccaggagctcggcggcatcgtcggctaccaggtgcggttcaccgaccgggttggc
aaagacaccaaggtcaagctcatgaccgacggcatcctgctcgccgagatccaccgcgac
cgtgagctcaccaagtacgacacgatcatcatcgacgaggcgcacgaacgcagcctcacg
gtcgacttcctgctcggctacctcaagcagctgctgccgcgccgccccgacctgaaggtc
atcatcacgagcgccacgatcgacccggtgagcttctccaagcacttcgacgatgccccc
atcatcgaggtctccgggcgcaccttcccggtggaggtccgctaccggccgctggtcccg
gatgcgatcgacgccgcggcgctcgggtccggcgatgagttcagcgatgagttcgagccc
gcggatgcccgcggcggcaagaatgcccgaaagggtacgaccgcgtcggaggacctcgac
cccatcgacggcatcaatgcggcgatcgacgaactcgcgcgcgagtcgatgggtgatgtg
ctcgtcttcctcagcggggaggcggagatccgcgatgccgaggatgccatccgcggccgc
aacctgccgcacaccgaggtgctcccgctgtacggcaggctgagcgccgccgaccagcac
aaggtgttccgcccctcgggcacccctggaacccggcgccgcatcatcctcgccaccaac
gtcgccgagacgagcctcacggttcccggcatccgctacgtcgtcgacgccggcatggcg
cggatctcccggtacagcgtgcgcgccaaggtgcagcgcctgccgatcgaggccatctcg
caggcgtcggcgaaccagcgctccggccgctcgggccgcacaagcgacggcatcgcgatc
cggctctactcggagcaggacttcgcccgccgcccggagtacaccgagccggagatcctg
cgcacgaacctcgccgcggttatcctgcagatgatctcactcggcctgggcgacatcgcc
gcgttcccgttcctgcagccgccggactctcgcggaatcaaggacgggctcgacctgctg
cgcgagctcggcgcggtcacgagcgacaaccgcatcaccaaggtcggccgtcagctggcg
caactgccgatcgacccgcgcctgggccgcatggtggtcgagtcgaagcagcacggcacg
acgcgcgaggtgatggcgatcgtggccgccctcagcatccaggacccgcgggagcgcccg
ctcgagcgccgcgcacaggcggaccagcagcacgcgcgattcaccgacccgacgagcgac
ttcctgacgctgctcaacatctggaactacctcaaggagaaggagagcgagctctcgtcg
agcgcgttccgccgcctgtgcaaggcggagtacctcaacttcctccgcatccgggagtgg
ggggatgtctaccggcagctgcaacgcatggcgaagcccctccagctcagcatcaacgat
ccaagcgtgaacccggtcggtatccacaagtcgctgctcgccgggctgctcagccagatc
ggcatcaaggaccgccagaagaaggactacgtcggcgcgcgccaggtgcggttcctgatc
ttccccggctcggcccttgcgaagaagcagccggatgccgtgatgagcgcggaactggtc
gagaccagccgcctattcgcccgggtcagcgccgcaatcgatccggcctgggccgagccg
ctcgccggcgacctcgccaagcgcagctatggcgagccacactgggaaaagaagcagggc
caggtcgtcgcgtacgagcgcgtcacgctctacggggtgccgatcgtcgagcggcggcgg
gtgcagttctcgcgcatcgacccggcgtacgcacgcgagctgttcatccggcacgcgctt
gtcgagagcgactgggagaccgaccggctcgacaagcgcgtcacggccttcgagcgggac
aaccgcgcgctgcgtaaggagctcgccgagcgtgaggagcgcacccgccgacgcgacatc
ctcgtcgacgacgagacggtcttcgagttctaccaccggcgcattccctccgacgtatat
tcgacccgctcgttcgagtcgtggtggaagaaggcgcgcctcgagacccccgacctgctc
acgatgaccgccgagaacctcatcgacgaggacgaggccgaggccggtatcgacgagaac
gagttcccgacctggtgggaccagggcgaccagcggctggggctgagctaccgtttcgag
cccggcgccgaggacgacggcgtcacggtgaagatccctctcgcgctcgtcgcccggctc
tcccccgccggcttcgactggcaggtgccggggctccgggaggagctcgtcacggcgctc
atcaaaagcctgccgaaggcgatccgccgcaacgttgtgcccgcggccgagtgggccaga
cgcctgctggagaacgcccggggactgccgatcgaggagctggagggcaccccgatcacc
gcgtacctcgccgacatgatccagcgcaagacccacacccccgtcgatccgggcgacttc
gacccggagcgggtcgccccgcacctgcgaatcaccttcgccgtcgtcgacgaccgcggc
acccaggtcgcgcgggccaaagacctcccgacactgcagcacaagctcaagtcgcgcgtg
cgggagtcggtcgcgaaggtcaccgaggccaccccgcacgccctcgaacgctcggccctt
gtcacctgggacttcgacgagctgccgaaggtagtcgacacccggcgcggcggcaccgtc
atccgcggctacccgacgctcgtcgacgagggtcagagcgtcgcgctgcgcgtcatggcg
acgaccgaggatcaggcggcggcgctgcccggcggcatccggcgcctgctgctgctcgcg
atcccgtcgccgctctcgtgggtgcgcgaccatctcagccagaccgagaagctgaccctt
gcctcgagcccgtaccagaacgtgcaggcgctgttcgacgactgcctcgtcgctgtgatg
gacgacgcactgcgggagatggcgcccggcggcctgctctggacccgcaccgagtacgag
gccgcccgcgcggccatctcggccggcctgatcgactcgctctacggcgtcgtctcggtc
gtcacctcgagcctcgctgcggcccgggacgccgagcgggcgatcacgaagacgacgagc
atgacgttgctgccggccctgaccgacgtgcgcgcgcagatcgcggcgctcatttatccg
gggttcatctccgctaccggcgtgacccaactgaagcacctgccacggtacctgcgtgcc
gtgtcggcccggctcgacaaactgccgaccgccgtcgcccaagaccgggtaagccagaat
gaggtcgcccgggcgatggagcggttcgtcgccgccggcggccgcatcccgctccccccg
gatgcgcccgagcgcctcgtgcgggtgcgctggctgctcgaggagctgcgcgtaagcctg
tttgcgcagcagttgcgcacggccgagccggtgagcctgcagcgcatcgtcaaggcgctc
gcgccatag
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