Misgurnus anguillicaudatus (oriental weatherfish): 129413657
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Entry
129413657 CDS
T09481
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a
KO
K19719
collagen type II alpha
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu04510
Focal adhesion
manu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129413657 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129413657 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
manu00536
]
129413657 (col2a1a)
Glycosaminoglycan binding proteins [BR:
manu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129413657 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Frataxin_Cyay
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
129413657
NCBI-ProteinID:
XP_073724020
LinkDB
All DBs
Position
5:complement(28583228..28604084)
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AA seq
1502 aa
AA seq
DB search
MFRLADSRTVLLLVATHCVLVTLVRCQQEDDQEELGGCIQDGQQYADRAVWKPEACRVCV
CDSGSVLCDEVICEDLTDCANPIIPPGECCPICPAETDEPIGSIGGKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGQRGEKGPKGDKGNVGPRGRDGEPGIPGNPGPPGPPGPPGPNSPV
GLGGNFAAQMSAGFDEKAGGASMGVMQGPMGPMGPRGPPGPSGAPGPQGFPGNPGETGEP
GPAGALGPRGPAGPPGKPGSDGESGKPGKPGDRGPTGPQGARGFPGTPGLPGIKGHRGHP
GLDGAKGESGAAGAKGETGSAGENGSPGPMGPRGLPGERGRSGAPGSAGARGNDGLPGPA
GPPGPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGQRGEAGAPGSPGPAGASGNDFFH
IIQGNPGTDGIPGAKGSAGAAGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFK
GESGPKGERGVAGPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLA
GAKGAPGDRGVPGVTGPKGSTGDPGRTGEPGLPGARGLTGRPGDAGAQGKVGPTGAPGED
GRPGPPGPLGARGQPGVMGFPGPKGANGEPGKPGEKGLIGRTGLRGLPGKDGETGPTGPP
GPAGVAGERGEQGQPGPSGFQGLPGPTGPPGEPGKPGDQGLPGEGGAVGAVGPRGERGFP
GERGGAGPQGLQGPRGLPGTPGTDGPKGAIGPAGASGAQGPPGLQGMPGERGTVGIPGAK
GDRGDSGEKGPEGAPGKDGTRGLTGPIGPPGPSGPNGAKGETGGIGPIGAPGSRGAPGDR
GEVGPPGPAGFAGPPGADGQPGLKGEHGESGQKGDAGSPGPQGPSGAPGPVGPTGITGPK
GARGAQGAPGATGFPGAAGRVGPPGPNGNPGGVGPAGPAGKDGPKGVRGDAGPPGRPGDA
GLRGPPGLSGEKGEPGQDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEP
GKQGASGSSGDRGPPGPVGPPGLTGPAGEPGREGNTGADGPPGRDGAAGAKGERGNTGPI
GAPGAPGAPGAPGSVGPIGKQGDRGENGPQGPAGAPGPAGARGMVGPQGPRGDKGEAGEA
GERGQKGHRGFTGLQGLPGPPGSPGDQGPAGPSGPSGAKGPAGPAGPSGKDGANGQPGPI
GPPGPRGRSGESGPAGPPGNPGPPGLPGPPGPGIDMSAFAGLGHTEKGPDPLRYMRADEA
SSSLRNHDVEVDATLKSINSQIEDIRAPDGSLKNPARSCRDLKLCYPEMKSGEYWVDPNL
GSIADAIKVYCNMETGETCVKPSTPKIPRKNWWSSKSKTNKHVWFGESMNGGFHFSYAAN
GQTATANIQMNFLRLLSTEATQTITYHCKNSIAYMDQATGNLKKALLLQGSNDVEIRAEG
NSRFTYGVLEDGCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGREDQEFGVDIGAVC
FL
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagcggattcacggactgtcttgctacttgtagcaacgcattgcgttttg
gtaacccttgtgagatgtcaacaagaagatgaccaagaagagttaggcggttgcatccaa
gatgggcagcagtatgcagaccgtgcggtatggaagccagaagcgtgccgcgtctgtgtg
tgcgactcagggtcggtgctgtgtgacgaagttatctgtgaggacttaaccgactgtgcc
aatcccatcattccacccggagagtgctgtcccatctgcccagctgaaaccgacgagcct
atcgggtcgattggtggaaagggacagaaaggagaaccaggcgatattgcagatgttgta
ggaccaagaggacctgctggcccaatgggacctccaggagaacagggacaacgtggtgag
aaaggacctaagggagataagggaaatgtcggacctagaggaagagatggcgaacctggt
atacctggtaacccaggaccccctggaccacccgggccaccaggacctaatagtccagtt
ggacttggaggaaactttgctgctcagatgtctgctggatttgatgagaaggccggaggt
gctagcatgggtgtgatgcagggaccaatgggtccaatgggcccccgtggacctcccggc
ccctctggagcacctggcccacaaggtttccctggcaaccctggagagactggcgaaccc
ggccctgctggtgcccttggaccccgtggaccagctggaccacctggaaaacctggaagc
gatggtgaatctggtaaacctggtaaacctggtgaccgtggacctacaggacctcaggga
gctcgtggattccctggaactcccggccttcctggcatcaagggacacagaggacaccca
ggtcttgatggagctaaaggagagagtggagctgcaggtgctaagggtgaaacaggttct
gccggtgagaatggttctcctggaccaatgggtccacgtggtctgcccggtgagagaggt
cgttctggagcccctggttctgctggtgcccgtggtaatgatggtctgcctggtcctgct
ggtccacctggccctgttggtccagctggtgctccaggtttcccaggatcccctggttcc
aagggagaagctggtcccaccggagctcgaggacccgagggtgcacaaggacaacgtgga
gaggctggtgcacctggatcacctggacccgctggtgcttctggtaatgatttctttcac
attatacagggtaaccccggaactgatggtattccaggagccaaagggtctgctggagcc
gctggtattgcaggcgcaccaggtttcccaggaccacgtggcccaccaggacctcaagga
gccaccggacctcttgggcctaaaggccaatctggagatcctggcatcccaggatttaaa
ggcgagtctggacccaagggagagcgtggtgttgctggacctcaaggtgctcctgggcca
tcaggagaggaaggcaagagaggtcctagaggagaacctggatctgctggacctcttgga
cctcctggagaaagaggagctccaggtaaccgtggattccctggtcaggatggtctagct
ggagcaaagggtgcacctggtgaccgtggtgttcctggtgtgaccggacctaaaggttca
actggagatcctggccgcacaggcgagcctggtcttcctggagctagaggtctcactgga
cgtcccggtgatgctggagcccaaggaaaagttggaccaactggagcccctggtgaagat
ggacgacctggtcctcctggacctctgggtgctcgcggtcagcccggtgtgatgggtttc
cctggtcccaaaggagccaatggtgaacctggaaaacctggagaaaaaggtcttattgga
cgcactggtcttagaggtttgcctggtaaagatggagagactggacctactggtccacct
ggtcctgctggtgttgctggtgagagaggagagcagggtcagcctggtccttctggcttc
cagggtctgccaggtcccactgggccacccggagagcccggtaaaccaggtgaccagggt
cttcctggagagggtggagctgtaggcgccgttggaccaagaggtgaacgtggtttccct
ggtgagagaggaggtgctggccctcaaggtcttcagggacccaggggacttccaggaaca
cccggaactgatggacctaagggtgcaattggaccagctggagcttccggtgctcagggt
cctcctggtctccagggaatgcctggtgagagaggaacagttggtattcctggagctaaa
ggtgacagaggtgacagcggagagaaaggacctgaaggtgctcccggcaaagatggcaca
agaggcttgactggtccaattggtccacctggtccttctggtcccaatggtgcaaagggt
gaaactggtggtattggcccaattggtgctcctggttctcgtggcgctcctggtgaccgt
ggtgaggttggtccacctggacctgctggatttgccggacctcctggtgctgatggccag
cctggactgaagggagagcatggtgagtcaggacagaaaggtgatgctggatctcccgga
cctcagggaccatcaggagcacctggtccagtaggcccaactggtattacaggacctaaa
ggagcacgtggagcccaaggagcccctggtgccactggtttcccaggagctgcaggaaga
gttggaccacccggccccaatggtaaccctggtggtgttggtccagcaggtcctgctggt
aaggatggtcctaagggagttcgcggtgatgctggtccacctggaagacctggagatgct
ggactccgtggacctcctggactttctggagagaagggagagcctggacaggatggtcct
cctggtcctgatggtccttccggtcctgctggtcttgctggtcagcgtggtattgttggt
ctacctggtcagcgtggtgaaagaggtttcccaggacttccaggaccctctggtgagcct
ggcaaacagggagcttctggttccagtggtgaccgtggacctcctggtcctgtcggacct
cctggattgactggacctgcaggagaacctggacgtgagggtaatactggagctgatggt
ccacctggtagagatggtgctgctggtgcgaagggtgagcgtggtaacactggcccaatt
ggtgctcctggagctcctggcgcccctggtgctcctggttccgttggcccaatcggaaag
cagggagacagaggagagaatggaccacaaggacccgctggagccccaggacccgctgga
gctagaggcatggttggaccccaaggacctcgtggtgataagggtgaggcaggagaagct
ggagaaagaggacagaaaggacacagaggattcactggtctgcagggtcttcctggacct
cctggttctcctggagaccagggtcctgctggaccttctggaccaagtggcgctaaggga
cctgctggacctgctggaccatctggtaaagatggtgctaatggacagcccggacctatt
ggaccacctgggcctcgtggacgttctggagaatctggccctgctggtccccctggtaac
cccggaccccctggtcttcccggacccccaggccctggcattgacatgtctgcctttgct
gggttgggccataccgaaaagggacctgatcccctgcgatacatgcgtgccgacgaggct
tccagctctcttagaaaccatgatgtagaagtggatgccaccttgaagtctataaacagc
cagattgaggacatccgcgcccctgatggctccctcaagaaccctgcacgtagctgccga
gacctgaagctgtgctaccctgaaatgaagagcggtgaatactgggtagatccaaacctt
ggtagcattgctgatgccatcaaagtttactgcaacatggagaccggtgagacctgcgtg
aagcccagcactcccaaaatcccacgcaagaactggtggagcagcaagagcaagacgaat
aagcacgtttggttcggcgagagcatgaacggcggattccacttcagctatgctgcaaat
ggccagactgccaccgccaacatccagatgaacttcctgaggctgttgtctaccgaggcc
actcagaccatcacctaccactgcaagaacagcattgcttacatggaccaagccacaggc
aaccttaagaaggctcttctgctgcagggatccaatgatgtggagatcagagcagagggc
aacagccgctttacctacggcgtgctggaggatggctgcaagaagcacacaggtcagtgg
gccaagactgtgattgagtacaaaactcagaagacatccaggctgcccatcgtggacatt
gctcctatggacatcggaagagaggatcaggagtttggagtggacattggtgcagtctgc
ttcttgtaa
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integrated database retrieval system
