Misgurnus anguillicaudatus (oriental weatherfish): 129419681
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Entry
129419681 CDS
T09481
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129419681 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129419681 (ddx6)
03036 Chromosome and associated proteins [BR:
manu03036
]
129419681 (ddx6)
Enzymes [BR:
manu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129419681 (ddx6)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
129419681 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
129419681 (ddx6)
Chromosome and associated proteins [BR:
manu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129419681 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
AAA_22
Motif
Other DBs
NCBI-GeneID:
129419681
NCBI-ProteinID:
XP_055030824
LinkDB
All DBs
Position
16:29627886..29651158
Genome browser
AA seq
484 aa
AA seq
DB search
MSTARMENPVILGLSNQNGQMRGSVKLAGGPGGGGGGSQPTQPAQVKGSSTVNNGNPQPS
PTANTIIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKP
SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDNIQAVVIVPTRELALQ
VSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVNK
VQMIVLDEADKLLSQDFVQMMEELLSSLPKQRQILLYSATFPLSVQKFMNAHLQKPYEIN
LMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGY
SCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYL
HRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESGE
EVKL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaatggagaatccggttattctgggactgtcgaatcagaatggccaa
atgcgaggctctgtgaagctagcagggggccctggaggtggtggagggggctcacaacca
acacagcctgcccaggtcaagggctccagcacagtcaacaacggcaacccccagccttca
cccacagccaacaccatcattaagcctggggatgactggaagaagaatctaaagcttcct
ccaaaggatatgcgcatgaaaacttcagatgtgacggcgaccaagggaaatgagtttgag
gattactgcttgaaacgggagctgcttatgggcatctttgaaatgggctgggagaaacca
tcacctatacaggaggagagcattcccattgcgttgtctgggagggacattctggcaaga
gccaagaacggcacaggaaaaagtggcgcctacctcattcccttacttgaacgcattgac
ctgaagaaagacaacatacaagcggtggtcattgtgcccaccagagaactggctctacag
gtgagtcagatctgcatccaggtcagcaaacacatgggcggggttaaggtcatggcaact
acaggtggaaccaaccttcgtgatgatataatgagactggacgaaacagtgcatgttatc
attgccactccaggaagaatcttagacctcatcaaaaagggggtggccaaagtcaacaaa
gtacagatgatcgtattggatgaggcagataagctcctgtcgcaggactttgtacagatg
atggaggaacttctgagctccttgcccaaacaaaggcaaattctgctgtactctgccacc
ttcccattgagtgtgcagaagtttatgaatgcccacctgcagaagccctatgagataaac
ctgatggaggagttgacactgaagggtgttacccagtattacgcctatgtaaccgaaagg
cagaaagtccattgccttaatacactcttctccaggctccagatcaaccagtcaataata
ttctgcaactcatcccagcgagtggagctcctcgccaagaagatctctcagcttggttac
tcctgtttctacattcacgccaagatgagacaggaacacagaaatcgggtgttccatgat
ttccgaaatggcttatgtcgaaatctcgtctgcactgatcttttcacaagaggaattgat
atacaagctgtgaatgtggtgatcaactttgatttccccaaacttggggagacatacctc
catcgcattggcagatctggtcgttttggacatttgggtcttgccatcaacttgatcaca
tatgatgaccgctttaacctgaagggtattgaagaacagctgggtactgagatcaaaccc
attcccagcagtattgacaagagtctatatgtggccgagtaccacagcgagagtggagag
gaggttaaactgtga
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