Misgurnus anguillicaudatus (oriental weatherfish): 129420785
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Entry
129420785 CDS
T09481
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03020
RNA polymerase
manu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129420785 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
129420785 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
manu03021
]
129420785 (polr2a)
03400 DNA repair and recombination proteins [BR:
manu03400
]
129420785 (polr2a)
Enzymes [BR:
manu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129420785 (polr2a)
Transcription machinery [BR:
manu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129420785 (polr2a)
DNA repair and recombination proteins [BR:
manu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129420785 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
129420785
NCBI-ProteinID:
XP_055031827
LinkDB
All DBs
Position
4:19681784..19696419
Genome browser
AA seq
1965 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMEPKY
ARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVE
FQNMATLKPSNKAFEKKFKFEYNNERALRRTLLEEVVKDVMTNAHVQSSLEREFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPVRVVEGVQELSKKLVI
VNGDDLLSRQAQENATLLFNIHLRSTLCSRRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGALSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYS
PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcgtcctcagccctgatgaacttaaacggatgtccgttactgaagggggtattaaa
tacccagagactacagaaggaggacgccctaaactgggtggactcatggaccccagacaa
ggggtcattgaaagatcaggcagatgccaaacatgtgcaggtaacatgactgaatgccct
ggtcattttggtcacattgagctggccaagccagtctttcatgttggcttcatcacaaaa
atcatgaaggtcctccgctgcgtctgcttcttctgttctaagctgcttgtggatgcgaac
aatccaaaaatcaaagacattctgaccaagtcgaaggggcagccacgaaagcgcctgacc
cacgtctatgatctctgtaaagggaaaaacatctgcgagggtggagaggagatggacaac
aagtttggtgtggagcagcaggagactgaagaagacatcaccaaagagaagggtcacgga
ggttgtggcaggtaccagccgcgaatccgtcgctctggactggagctgtatgctgagtgg
aagcacgtcaatgaagactctcaggagaagaagattcttctcagccctgaacgcgtgcat
gagatctttaaacgcatttcggacgaagaggacataatcctgggaatggagcccaaatat
gcccgcccagagtggatgatcgtcacagttttgcctgttccgcctttatctgtgaggccg
gctgtggtcatgcaaggctctgctagaaatcaggatgacttgacgcataagttggctgac
attgtaaagatcaataaccagctaaggcgaaacgagcagagtggtgccgcagctcacgtt
atagcagaggatgtcaagctgcttcagtttcatgtagccaccatggtggacaatgaactg
ccaggtctaccaagagcaatgcaaaagtctggccgcccgctgaaatccatcaagcaaagg
cttaaggggaaggaaggacgtgtcagaggtaatctgatgggtaagcgtgtagacttttct
gcccgaactgtcatcacgcctgaccccaacctgcagatcgaccaagtgggagttccccgc
tccatcgctgcaaacatgaccttccctgagattgtcacaccctttaacattgacagactt
caagagcttgtgaggagaggtaacagccagtaccctggagccaaatatatcatccgtgat
aacggagacagaattgacctgcgattccacccgaaaccaagtgaccttcatcttcagata
ggatacaaagtcgaacggcatatgtgtgacggagacattattgtgttcaacagacagcca
accctgcacaaaatgtctatgatgggccacagagtgcgaatattgccttggtctacattt
cgacttaaccttagtgtgaccaccccatacaatgctgactttgacggtgatgagatgaac
ctgcacttgccacagtctctggagacccgcgctgagatccaggagctggctatggtgcct
cgtatgattgtcacgccacagtccaacaggcccgtcatgggcattgtacaggacacactc
acagctgtgcgcaagttcacaaaaagagacgtgttcttagaaaggggtgaggtgatgaac
ctcctgatgtttctttccacatgggatggtaaaatgccacagcctgccatcctgaagcct
cggccactctggacaggcaagcagattttcagcttgatcatcccagggcacattaacgtc
atccgcacacacagcactcatcctgatgaagaggatagtggtccttataaacacatttcc
cctggagacaccaaggtaattgtggagaatggggaactgatcatggggatcctgtgtaag
aaatctctgggaacttctgcgggctcattggtccatatctcataccttgagatgggccat
gacatcacacgactcttttattccaacatccagactgttgtcaacaactggcttcttatt
gagggtcattctattggtattggagattccattgctgataaggcgacatatcaggacatt
caaaacacaattaagaaagccaaacaagatgtgatagaggtcattgagaaagctcacaat
aatgagttggagcccaccccaggtaacacgctgagacagacctttgagaaccaggtcaac
cgtattctgaacgatgctcgtgacaagactggatcctctgcccagaaatcactgtcagag
tacaataatttcaaatctatggtggtggctggttcaaaaggctctaaaattaacatttca
caggttattgctgtggtagggcagcagaacgttgagggtaagcgaatcccttttggtttc
aagcaccgcactttgcctcacttcattaaggatgactacggtccagagagtagaggcttt
gtggaaaactcctatttggccggtctgacaccaactgagttcttctttcacgccatggga
ggaagagagggtttgatcgacacagctgtcaaaactgctgagactggttacattcagcgt
cgtctgatcaagtctatggagtctgtcatggtcaagtatgatgctacagtcagaaactcc
attaaccaggttgtccaacttcgatatggggaggatgggctggcaggagagtctgtggag
tttcagaatatggctactcttaaaccatccaacaaagcctttgagaagaagtttaagttt
gaatacaacaatgagcgagctctccgccgcactctgctggaggaggtggtgaaagatgtg
atgaccaatgctcacgtccagagttcactagagcgagagtttgagaagatgagggaagac
cgagagatcctgagggcaattttccccacaggagacagcaaggtggtactgccgtgcaat
ttggctcgtatgatttggaatgcacagaagattttccgtatcaatcctcgaacaccgact
gatcttaacccagtacgagttgtggaaggagttcaggagttgagtaagaagctcgtgatt
gtgaatggtgatgacctgttaagcaggcaagcacaggaaaacgccactttactcttcaat
atccacctgcgctccaccctttgctccagacgaatgactgaggagttccgcctaagcaca
gaggctttcgattggctgctgggagaaatcgagaccaaatttaaccaatccatcgctcat
cctggagagatggttggtgccctggctgctcagtctctaggagagcctgccactcagatg
accctgaacacattccactacgccggcgtgtccgccaaaaacgtcaccctcggtgtgcct
cgtctcaaagagctgatcaacatctccaagcgacccaagaccccctccctgacagtgttt
cttctgggtcaagcggcccgtgatgcagagagggccaaagatatcctgtgtcgcttggag
cacaccacccttcgcaaggtcaccgccaacacggccatttattacgaccccaatccacag
aacaccgttgtgtctgaggatcaagagtgggtgaacgtgtactacgagatgcccgacttt
gacgtgacccgtatttcaccatggctgttacgtattgaacttgaccgcaaacacatgact
gaccgtaagctgaccatggagcagattgctgagaagatcaatgctggttttggtgatgac
ctaaactgcatcttcaacgatgacaatgctgagaagctggtgctgcgaatccgcatcatg
aatagcgacgagaacaagtttcaggaggatgaggaggtagtggataagatggatgatgat
gtcttcctccgctgcattgaatccaacatgctgacggacatgactctgcaaggcattgag
cagatcagcaaggtgtacatgcatcttccacagacagacaacaagaagaaaatcatcatc
acagaagatggtgagtttaaagccctgcaggagtggattctggaaaccgatggcgtgagc
ctcatgagagtcctcagcgagaaggatgtggaccctgtcaggaccacctctaatgacatt
gtggagattttcactgtccttggtattgaggcggtgcgaaaggctctggaaagagagttg
taccatgtcatctcttttgatggttcctatgtcaactaccgccatctggccttgctgtgc
gacacaatgacctgtagagggcatcttatggccattactcgtcatggcatcaacagacag
gatactggaccactcatgaagtgctcctttgaagagacggttgatgtgttgatggaagcg
tcatctcatggtgaaagtgacccaatgaaaggagtatctgaaaacatcatgttgggacag
cttgctcctgcaggcactggatgctttgacctgttgttggatgctgagaagtgcaagtat
ggtatggagatccctaccaacatccctggcatcagtgttgcaggacccacgggtatgttc
tttggctccgcaccaagcccaatgagtggcatgtccccagccatgactccctggaacacc
ggagccactcctgcatatggtgcttggtcacccagtgttggaagtggaatgacacctggg
gcagcaggtttctctcccagtgctgcatctgatgccagtggtttctcacctggctattct
cctgcctggtcacctactcctggttctcctggatcacctggaccagccagcccttacatc
ccctcaccaggagccttgtctcccaattactccccaacttctcctgcctacgagcctcgt
tctccaggtggttacaccccacagagtcccggctactccccaacctcgccatcatactct
ccaacttctccgtcttactctccgaccagcccgaactacagccccacatctccgtcctat
tcgcccacatcaccctcctactcccccacgtctccgtcttattcgccaacatctccgagc
tactctccaacatcaccctcttactctccgacttcgccgtcgtactctccaacctcacct
tcgtactcgcccacatcacccagctatagcccaacgtcaccaagctacagcccaacctcc
cccagctacagtcccacatccccatcctattctccaacctctccgtcttattccccaacc
tccccgtcttactctcctacctctcctagctattctccaacctctccatcctactcccca
acatctccaagctacagcccaacttcacctaactacacgcccacctcgcccagttactcc
ccaacttctccgtcgtacagccccacctcgccctcctactctcccacctctcccaattac
accccgaccagtcccaactactcccccacatctccttcatactcccccacctctccatcc
tactctccctccagtccacgctacaccccgcagtctcccacctacaccccaagttcaccg
tcttacagccccagctctccgtcgtattcacccacgtctccaaaatacactcccacctct
ccttcctacagtccaagctctcccgagtacaccccaacgtctcccaaatactcacccact
tcgccgaagtactctcccacttcaccaaaatacagccccacttctccgacctattctcca
actacacccaagtacagtcccacgtctccgacttactcgccaacatctcccacctacacc
ccaaccagtcccaaatattcacccacctctccgacctactctccaacttctccgaaatac
tccccaacgtcccctacatactctccaactagccccaagggatccacctacagccccact
tctcctggctatagccccacctctccaacctacagcccagccatcagtcctgatgacagc
gatgaggaaaataactaa
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integrated database retrieval system
