| Entry |
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| Symbol |
pcf11
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| Name |
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
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| KO |
| K14400 | pre-mRNA cleavage complex 2 protein Pcf11 |
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| Organism |
manu Misgurnus anguillicaudatus (oriental weatherfish)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:manu00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129423248 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:manu03021]
129423248 (pcf11)
03019 Messenger RNA biogenesis [BR:manu03019]
129423248 (pcf11)
Transcription machinery [BR:manu03021]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129423248 (pcf11)
Messenger RNA biogenesis [BR:manu03019]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
129423248 (pcf11)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
9:complement(20360878..20370543)
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| AA seq |
1452 aa
MSEESARVDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPAG
ERLPVLYLVDSIVKNVGGQYLEVFAKNLVNSFICVFEKVDEVTRKSLFKLRSTWDDIFPL
KKLYALDVRVNSLDPAWPIKPLPPNVSSNASIHVNPLFLQPAEEVSPKSLTQEQVIRQQL
LAKQKQLLELQQKKIELELEQTKAQLAASPVVATSHHIPTPVRVGPSPLSTQKVSAPQPK
PWLPAPSEKLTRDPRINRTSTTATNTKEQVIQKKESQVTPSFPSTAEKRGQMLTEKQKFD
RLRIPKKDNSAVEEKAKSKSVSPAGKGLLFRSKEIESQKDVQVSKKDPRLHKQVHDKTDL
KEEDVREKKRSSEKKDRDEALKSMDHQKSSSIRSKLLNGSLNKQEKLETFMKKEIKVNKD
NFRKRSRSRSRSPPSHSPKRKERRSSPKRKTRSITPPSKSVKSRPLSKESFLQTLRDERS
TSKKSVSESRRSKRPLEDRSADHKESVQQRISPADHKDTKDNKRWRSGWEEHKSPKQSEQ
DLSHGRLGPQRHKTWNTNQRPTTPRTPKQHRLSVDANIQIPAALNSASKRDLLRKASQRH
ANGEISNEEFLRVAHQIKQLFQYQEEIQRSDSWDDSCDEAVYSSKQKSQGSISDAELSYL
EHKLKLKRTQLHRPVLKGNLMHRNLRYQQPPYDLSDQYSEGLDVHKKPNDAMKPVLDHED
PRRTDRALSNTSSTFRNSPSPVHLDRTFEHAPSPAELEMDQPGDISPRFESPNSVHSGTG
PDDDPINLEGLPGHDPFVEQGRIAQNLDDSPGHTPTHSNEGPTVKGNMPRHEGPNIPQRF
DRFQSSQAPHDGAPGHIREPRLDGPPRLDGPPRPFPPARYEGNTGGFDGSGGHGPVRFPG
PRYDAPHLRFERPPFPKPHERPMRFNNPPVGHRPMRFGEPRNMVRFGEPQAPVRFDHPMH
QNRYVTPPRFDNPHMQQGPPGYDEPRFQGRPMNFDDQQGGVRFENPSGGMQFENPMQSES
IRFDAPPVMPRFDPQAPPRYCGPNIPNQLRPQEQTLYDQSQGQGPVINPAVPPPNFSVPP
MNTFVGPPQQFPMQPNVSQASNFSVPSAPSSEFQNSFRPPFPGQVVGNVPQPMMSAPNQP
YMPPNQLPFQPASQFPQPEQFRQIDVNDLLTKLLSTGIIKPAQTTTTDSTSASPFSCVAD
EEEEEEQEDDDDVPDMTGFVLDEMKQRHDSVVTKLYTGIQCYSCGMRFTSSQTDIYADHL
DWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVQKTQE
AAKEREFQSVKAAADVVDELCEICQEQFEMYWEEEEEEWHLKNAIRVDEKTYHPACYEDY
KNTSSFVDCTPSPNKMLTENPLTTFMKQEQVSDETSCSSIKEEPSEDGTDPPMVKEEVQV
KLEEESQTSAIF |
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| NT seq |
4359 nt +upstreamnt +downstreamnt
atgtccgaagaaagcgcgagggtggacgcctgtcgcgagtatcagtcctcgctcgaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagcagaagagaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctgctggt
gagaggctcccagttttgtacttagtggattccatagtgaagaatgttggaggccaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggtcactagaaaaagtctcttcaaattgcgttccacatgggatgatattttccctttg
aagaagctgtatgcactagatgtacgtgtgaactctctagatcctgcctggcctattaaa
ccattgcccccaaatgtgagcagcaacgccagcattcatgtcaacccattatttttacaa
ccggctgaagaagtttctccaaagagcttgacacaagaacaagtcataaggcaacagttg
cttgccaagcaaaagcagttgttagaacttcagcaaaagaagatagagcttgaacttgag
caaacaaaggctcagttggctgcgagtcctgttgttgcaacaagccaccatatccctacc
ccagtccgtgttggtccatcaccactgagcactcaaaaagtttctgcaccacagcccaaa
ccttggcttccagcaccatcagagaagttaaccagagatcctcgaataaacagaactagt
acaacagctacaaatacaaaggaacaagtaatacaaaaaaaggagagtcaggttacacca
agttttccaagtacagctgaaaaaagaggacaaatgttaactgaaaaacagaaatttgac
aggttgaggattcctaaaaaagacaactctgctgttgaggaaaaggctaaatccaagtct
gtgtcaccagctggtaaaggtctccttttcagatccaaggaaattgagtctcaaaaggat
gttcaagttagtaaaaaggacccaaggctacataagcaggtacatgacaagaccgattta
aaagaggaagatgtcagagagaagaaaagaagttcagagaagaaggatagggatgaggct
ctcaaaagcatggatcatcagaaatctagcagcatcaggagcaaacttctaaacggctct
ttaaataaacaagaaaaactagagacttttatgaaaaaagaaattaaagtcaacaaagac
aattttaggaaaaggtctcggtcaagatctcgttcaccaccgtcgcattctcccaaaaga
aaagagaggcggtcatctccaaagagaaaaacaaggagtataacaccaccctccaagtca
gtgaaatctaggccgttaagcaaagagtcgtttttgcaaacattaagagatgaacgaagt
acctcaaagaaaagcgtctccgaatcgaggagatcaaaacggcctctcgaggatagatct
gcagatcataaagagagcgtgcagcagagaatctctcccgctgatcacaaagacacgaaa
gacaacaaaaggtggaggagtggatgggaggaacataaatctcccaaacagtcggagcag
gatctttcacatggaagactgggccctcagagacacaagacatggaacactaatcaaaga
ccaaccacacctcgtacacctaaacaacataggttaagtgttgatgccaacatacaaata
ccagcagcactcaattctgcaagtaaacgagatcttttaagaaaggcaagccaaaggcat
gctaatggtgagatatcaaatgaggaattcctcagggtagcacatcaaataaagcagctt
tttcagtatcaagaggaaatacagcgctctgactcttgggatgactcgtgtgatgaagcc
gtgtactcctcaaaacagaaatcgcaaggatccatatctgatgccgagctttcttatctt
gaacataaattgaagctgaaaagaacacagctgcatcgtccagtgctaaaagggaatctg
atgcatagaaacctccgctatcagcaacctccttatgatctgagcgatcaatacagtgag
ggcctagatgtgcataaaaaacctaatgatgccatgaagccagtcttggaccacgaggat
cccagaagaactgatagggctctgtcgaatacaagctctactttcagaaattcaccaagt
ccagtccacttggacaggacatttgagcatgcaccatcgcctgctgaattagaaatggat
cagcctggagacatcagcccacgttttgaaagtcctaacagtgtgcactctggcacaggc
ccagatgatgatccaataaatttagaaggtcttcctgggcatgatccttttgtggaacag
ggaagaatcgcacaaaaccttgatgactcgcctgggcatacaccaacacactcaaatgaa
ggtccgactgtcaaagggaatatgccacgacacgaagggccaaatattcctcaacgattt
gatagatttcagagttctcaagctccccatgatggggcaccaggccacatccgagagcct
agattagatggcccgccaagattagatggcccaccaagaccttttcctcctgctcgatat
gaaggcaatacaggtggatttgatgggtcaggtggtcatggacctgttaggtttcctgga
cctcgatatgatgcccctcatttacggtttgaaagaccaccatttcccaaacctcatgaa
agacctatgagatttaataatccaccagtgggtcatcggccaatgaggtttggagagcct
cgtaatatggtgagatttggtgagcctcaagctccggttcgttttgatcatccgatgcat
caaaacagatacgttactccgccaaggttcgataatcctcacatgcaacagggtccacca
ggatacgatgaaccaaggttccaaggaagaccaatgaatttcgatgaccaacagggcggt
gttagatttgagaatccgtcaggtggaatgcaatttgaaaatccaatgcagtcagaatct
ataagatttgatgcgccaccagtcatgcccagatttgacccacaagcccccccaagatac
tgcggtccaaatatcccaaaccagctaagaccacaagagcagacactgtatgatcaatct
caagggcaaggtcctgtgataaaccctgctgtacctccacccaacttcagcgttccaccc
atgaacacttttgttggcccaccacaacaattcccaatgcagccaaatgtttcacaagca
tcaaacttcagtgtgccaagtgctccatcatcagaattccaaaattcatttagacctcca
ttccctggtcaagttgttggaaatgttcctcagcctatgatgagcgctcctaatcagccc
tacatgccaccaaaccagcttcctttccagcctgcttcccagtttccacagcctgagcaa
tttaggcaaatagatgtgaatgatctgttaacaaaacttctatccactggaattataaaa
cctgcgcaaacgacaactactgactccacctcagcaagtccattttcatgtgtggctgac
gaagaggaagaggaggaacaagaggatgacgacgatgtcccagatatgaccggctttgtt
ttggatgaaatgaaacagagacatgacagtgtcgtcaccaaactgtatactggaatccag
tgctattcctgtggtatgcgttttacttcgtctcagactgacatctatgctgatcatttg
gactggcactacagacagaaccgttcagagaaggatatcagtaagaaagttacacatcgg
cggtggtactacagcctgacggactggattgaatttgaagaaattgcagatcttgaagag
agggcaaagagtcagttctttgaaaaagttcatgaagaggttgtgcagaaaactcaggaa
gcagccaaagagagagagtttcaaagcgttaaggctgctgctgatgttgtcgatgagtta
tgtgagatttgccaggaacagtttgagatgtactgggaggaggaagaggaggagtggcac
ctgaagaatgctattagagttgatgaaaagacttatcatccagcatgctacgaagactac
aaaaatacatcctcctttgtggactgcactccctcacccaataaaatgcttacagaaaac
cctttaacaactttcatgaagcaggagcaggttagcgatgagacttcatgctccagtatt
aaagaagaaccctctgaggatggtacggatccaccaatggtaaaagaggaagttcaggtt
aaattagaagaagaatcacaaaccagtgcaattttctaa |
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