Misgurnus anguillicaudatus (oriental weatherfish): 129423592
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Entry
129423592 CDS
T09481
Symbol
col5a1
Name
(RefSeq) collagen alpha-1(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129423592 (col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
manu00536
]
129423592 (col5a1)
Glycosaminoglycan binding proteins [BR:
manu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129423592 (col5a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
129423592
NCBI-ProteinID:
XP_073727595
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All DBs
Position
9:complement(31988384..32112906)
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AA seq
2037 aa
AA seq
DB search
MDTPIRWKVKRRFKELRLSVLVVLLTFVTSRASAAQPADLLKILDFHSLPDGVTKTTGFC
THRKTSKGPDVAYRVTKDAQLSAPTKQLYPSSVFPEDFSILATVKPKKGSQSFLLSVYNE
QGIQQLGLEVGRSPVFLYEDHLGKPGPEDYPLFRGVNLADGKWHRVAISIHKQSITLILD
CKKKITRTLSRSPHPIIDTKGIVVFGTRILDEEVFEGDIQQLMIVADHRAAFDYCEHYSP
DCEVPAPEQHQNQDPNTDEYNTGDENYYYEYPYYEDMEKTDETATTDEATGTTTEDLTVS
LPDNSRVITSVISGSSGRIGGSSSSSSSSSSSSSSSSSSSSSSSSSDSSPKTGEDAYDSY
DGYDGYYDESTSRPDGSRTITITSTGTAGEADLGLGGEVDLRLGSEVDLGLDSEVDLGLG
GGVNRRIITSGGGGSGRVHTTYTITHNGTSSSGSGVSTGSGSSVSTGSGSSVSTGSRVGG
GSSSSVSTGSSSSSTSVSGYDDNNYGDYEEGYNEEYEYYTAGGGGSSSTSVSVGGGSVSV
GGGSVSVGGGSVSIGGGSVSSSGSVGGGGSTSAGASVGTGSIATGAGQGGIKGEADSIDI
DKFKEESILDYTDEDLEKFYDYDTKYTDPNKALPAETDETYDQVDGIRGEKGQKGEPAII
EPGMLFEGPPGPEGPTGLPGPPGTSGPPGSPGDTGERGLPGRSGLPGADGLPGPPGTVLM
LPFRMSTGGDSKGPAASAQEAQMQAIMQQARLAMRGPTGPMGLTGRPGPLGPPGVPGLKG
ESGEAGPQGPRGPLGSMGPAGKPGRRGRPGADGARGMPGQTGPKGDRGFDGLAGLPGEKG
HRGETGPQGPPGPPGEDGERGDDGEVGPRGLPGEPGPRGLLGPKGPQGPPGSPGVTGMDG
HPGPKGNIGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPTGKPGLPGMPGADGPPG
HPGKEGPSGEKGHLGPPGAQGPIGYPGPRGVKGADGVRGLKGNKGEKGEDGFPGFKGDMG
IKGDRGELGAAGPRGEDGPEGPKGRSGLPGDPGPLGSTGDKGKLGVPGLPGYPGRQGPKG
SQGFQGFQGASGEKGTRGTPGKPGPRGQRGPTGPRGERGPRGPTGKAGPKGNSGSDGPPG
PPGERGLMGPQGPTGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQG
PTGETGPMGERGHPGPPGPPGEQGLPGPAGKEGAKGDPGPAGPTGKDGPPGLRGFPGERG
LPGPVGSAGLKGSEGPPGPPGPSGSPGERGPAGPAGPTGLPGRPGPQGPPGPAGEKGGPG
EKGPQGPAGRDGIQGPVGLPGPAGPIGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTG
PQGPVGQPGPSGADGEPGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETG
DVGQMGPPGPPGPRGPSGPPGADGPQGPPGGIGNPGAVGEKGDSGEPGEPGQQGDVGPLG
PRGERGEKGESGPAGSAGPPGPKGPPGDDGPKGSPGPSGFPGDPGPPGEPGPPGLDGAAG
DKGDDGEAGQPGSPGPTGETGPTGPPGKRGPPGPAGPEGRQGEKGAKGESGLEGPAGKTG
PVGPQGAPGKPGPEGLRGVPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDTGVKGEKG
HPGLIGLIGPPGEQGEKGDRGLPGPQGASGPKGDNGISGPSGPLGPIGPPGLPGPPGPKG
AKGSSGQTGPKGESGHPGPPGPPGPPGDVIHPLPILSSPKRAKRNIDASQMMDDAADANY
KDYEDGMEEIFGSLNSLKLEIEQMKHPLGTQTNPARTCKDLQLCHPDFPDGEYWVDPNQG
CSRDSFKVYCNFTAGGESCIFPDKKSEGARLTSWVKESPGSWFSEFKRGKLLSYVDAEGN
PISVVQMTFLRLLSATARQNITYNCYQSVAWHDQDQDSYDKAIRFLGSNDEEMSYDNNPY
IRAAVDGCALKKGYEKTILEINTPKVEQVPFVDIMFNDFGGATQKFGFEVGPACFIG
NT seq
6114 nt
NT seq
+upstream
nt +downstream
nt
atggatacacctataagatggaaagtaaagaggaggtttaaggagttgcgactgtcggta
ctcgttgtgttactgacgtttgtcacctcccgagcgagcgcagctcagcctgccgatctc
ctaaagattttagattttcacagtttgccagacggcgtaacaaaaacgacaggtttctgc
acacacaggaagacgtcgaaagggcccgatgtcgcctacagagtcacaaaagatgcacag
ctcagcgctccgactaaacaactttatccctcatccgtgtttcccgaggacttctctatc
ctggcaacggtgaagccgaagaaaggcagtcagtccttcctgctgtcggtctataacgaa
cagggcatccagcagctcggattagaggttggccggtctccggtcttcctgtacgaggat
cacctgggtaaacctggcccagaggactacccgctcttcagaggggtcaacctggcagac
ggaaagtggcaccgtgtggcgatcagcattcacaaacagagcatcactctgattttggac
tgtaagaaaaagatcacacggacgctatccagaagccctcatcccatcatcgacaccaaa
gggattgtggtctttggaacgcgtatcctggacgaggaggtgtttgagggtgacatccag
cagctgatgattgtagcagaccaccgggcagcatttgactactgtgagcactacagccct
gactgtgaggttcccgccccagaacaacaccagaaccaagacccaaacactgatgaatac
aacacaggcgatgaaaactactattatgaatatccatactatgaggacatggagaagacg
gacgaaacggcgacaaccgatgaagcgactggaacgacgacagaagacctgacggtgtct
cttccggataacagtcgtgtgattacctcagttatctctggaagttcaggaagaattgga
ggatccagcagttcgtccagtagctcttcgtcctcctcatcctcgtcatcatcttcatct
tcgtcttcctcatcttctgactcttccccaaaaaccggcgaggacgcgtacgactcctac
gacggttacgatgggtactacgacgagtcgacctcgcggcccgacggctctcggaccatc
acgatcaccagcacaggtacagcaggagaagcggacctcggactgggcggagaagtggat
ctcagactgggcagcgaggtggatctcggactggacagtgaggtggatctcggactggga
ggaggagtgaacaggcgcattatcacgtctggaggaggaggaagtggaagagttcacaca
acctacactatcacacataacggaacctctagttctggatccggtgtgagtaccggctcc
ggctcaagtgtgagtacaggctctggctccagcgtgagtacaggttccagggtcggtggc
ggctccagctctagtgtcagtactggatccagttcttcatctacctcggttagtggttat
gatgacaacaattacggagactatgaagaaggttacaatgaagaatatgaatattacaca
gcgggcggtggcggcagcagcagcacctctgtgtccgttggaggtgggtctgtttcagtt
gggggcgggtctgtgtccgtcgggggcggatctgtgtcgatcggaggcggatctgtttcc
tcaagtggctcagtgggagggggcgggtccacaagtgccggtgctagcgtggggacggga
tccattgccacaggagctggacagggaggaatcaaaggagaggcggattccattgatatt
gacaagttcaaggaggagtccattctagattacacagatgaagacctagagaagttttat
gactatgacaccaaatacactgatcccaataaagcgcttcctgcggagaccgacgagacc
tatgaccaggtggatggaatcagaggagagaaaggccagaagggagagcctgctatcatt
gaaccagggatgctgtttgaaggacctcctggtccagagggtcccacgggtctccccggt
cctccaggtacatcaggacctccgggtagccccggagacactggtgagaggggtctacct
ggtcgctctggtctgcccggtgctgatggtcttccaggacctccagggacagttctgatg
ttgcctttccgcatgagtacaggaggagacagtaaaggtcctgctgcttctgcacaagag
gctcagatgcaagccatcatgcaacaggccaggctggcaatgagaggtccaaccggacca
atgggattgacaggccgtcctggtcctctgggtcctcctggtgtgcctggacttaaagga
gagtctggagaggcaggaccacagggtccccgtggtccattgggatctatgggccctgct
ggaaagccaggtagaaggggtcgacccggagcagatggagcaagaggaatgcctgggcag
accggaccgaagggtgacagaggattcgacggtcttgctggtttgcctggtgaaaaaggc
cacaggggtgagacgggacctcagggccccccaggacctccaggagaggacggagaaaga
ggtgatgatggtgaggttggacccaggggtctgcctggtgagcctggtcctcgtggtttg
ctgggccccaaaggtccccagggtcccccaggatctcctggtgtgactggaatggatggt
catccaggacctaaaggaaacattggacctcaaggtgagcccggccctcctggacaacaa
ggcaaccctggagctcagggacttccaggccctcagggagcaatcggaccgccaggagag
aagggtcccactggaaagccgggactaccgggaatgccaggagcagatggacctccgggt
caccctggtaaagaaggaccttctggggagaaaggacatctgggaccacctggtgctcag
gggcctattggatatcctgggcctagaggtgtaaagggtgctgatggagtccgtgggctg
aaaggaaacaagggtgaaaagggagaagatggttttcctggatttaaaggagatatgggc
atcaaaggagatcggggagaacttggagctgctgggcccagaggtgaagatggaccagaa
ggacccaaaggaagatccggtctccccggagaccctggacctctcgggtcgaccggagat
aagggtaagctcggtgtgcccggtttgccaggttatccaggaagacaaggccccaagggt
tctcaaggattccagggtttccaaggagccagtggagaaaaaggcacaagggggacacca
gggaagccaggtccacggggacagagaggaccaacgggacctcgaggagaaagaggaccc
aggggacccacaggaaaagcaggaccaaagggcaactcaggaagcgatggcccaccagga
ccacccggtgaacggggcctgatgggaccacaagggcctaccggattccccggccccaag
ggcccacctggaccagctggaaaggatgggctgcccggacaccccggccagagaggagaa
actggtttccaaggtaaaactggaccaccaggacccccaggtgttgtcggacctcaggga
ccaacaggtgaaacaggaccaatgggagaacgaggtcaccctggacccccaggaccaccc
ggtgaacagggtctgcccggacctgcaggcaaagagggagcgaagggagatccaggtcca
gcaggtcccacaggtaaagatggacctccagggctacgaggattcccaggcgagagaggt
ttaccaggccctgtgggatcagcaggtttgaaaggaagtgaaggccctcctggtccacct
ggaccttctggttctcctggtgaacgtggtcctgctggcccagccggtcccaccggcctc
ccgggccgacccggacctcaaggacccccgggccctgctggagagaaaggtggacctggt
gagaaaggacctcaaggcccagccggtagagatggcattcagggaccggtgggacttcca
ggccctgccggaccaattggacctccgggagaggatggtgataagggagagattggagaa
ccaggacagaagggaagcaaaggtgacaagggcgagcagggtcctccagggccaaccggt
ccccagggccccgtgggtcagcctggtccttctggtgcagatggagagccaggtcccaga
ggtcaacagggtctgtttggacaaaagggagatgagggatctcgaggtttcccgggacca
cccggacccgtcggccttcagggcctacctggaccacctggtgagaaaggagagaccggt
gatgtcggtcagatgggtcctcctggaccaccaggaccccgaggaccctctggaccccca
ggagccgacggaccccagggacctccaggtggtattggaaacccaggagcagtgggagag
aagggtgattctggagaaccaggagaaccgggtcaacaaggagatgttggccctctgggt
ccaagaggagaaagaggagagaagggagaatctggacctgctggttccgctggtcctcct
ggtccaaaaggaccacccggagatgatggtcctaaaggaagtcctggtccgagtggattc
cctggtgatcctggtcctcctggagagcctgggccacctggtttggatggggctgctgga
gataagggagatgatggagaagctggtcagccgggttcccctggaccaactggtgaaact
gggcccaccggtcctccaggaaagagaggacctcctggacctgctggacctgaaggaaga
cagggagagaagggtgccaagggtgaatctggtctggagggtccggctggaaagacgggt
ccggttggacctcagggagctcctggaaagcctggtcctgagggtctgagaggagttccc
ggtccagtgggagaacaaggactacctggttcccctggacccgatggacctcctgggccg
atgggtcctcctggtttacctggtttgaagggagatactggtgttaaaggtgaaaagggt
catcctggtctgattggacttattggacctccaggagagcagggcgagaagggtgaccgg
ggtctgcctggtccacagggtgcttccggacctaaaggagacaatggtatttctggaccc
tctggaccccttggaccgatcggacctcctggacttccgggtcctcctggtcctaaaggt
gctaaaggatcaagtggtcaaactggtccgaagggagaatctggacatccgggacctcct
ggacctccaggtccacccggtgatgtcatccaccctctgcctattctttccagcccaaaa
cgggcaaagaggaacatcgatgcaagccagatgatggacgacgctgcagatgccaactac
aaagactatgaggatggtatggaggagatctttggctctctgaactctctcaaactggaa
attgaacagatgaagcacccgctgggcacgcagactaaccccgcccgtacctgcaaagac
ttacagctgtgccacccagatttcccagatggtgaatactgggtcgatccaaaccagggc
tgttccagagactcgtttaaagtgtactgtaatttcacagctggcggggagagctgcata
tttcctgataagaagagcgaaggggccaggctcacctcctgggtgaaggagagtccaggg
tcgtggttcagtgaattcaaacgtggtaaactgctttcttacgtggatgcagaaggaaac
ccgatcagtgttgtccagatgacgttcctgcgtttactcagtgccacggcacggcagaac
atcacctacaactgttaccagtctgtggcttggcacgaccaggatcaggactcttacgac
aaagccatccgcttcctgggctccaacgatgaggagatgtcatacgacaacaacccgtac
atcagagccgctgtcgacggatgtgcgttgaaaaagggctacgaaaagactattcttgag
atcaacacgccaaaggtggagcaggtaccgtttgttgacattatgttcaacgatttcggc
ggagcgacgcagaagtttggcttcgaggtcggaccggcctgtttcatcggctaa
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