Misgurnus anguillicaudatus (oriental weatherfish): 129424250
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Entry
129424250 CDS
T09481
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03082
ATP-dependent chromatin remodeling
manu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129424250 (smarcb1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129424250 (smarcb1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
manu01009
]
129424250 (smarcb1b)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
manu03021
]
129424250 (smarcb1b)
03036 Chromosome and associated proteins [BR:
manu03036
]
129424250 (smarcb1b)
Protein phosphatases and associated proteins [BR:
manu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129424250 (smarcb1b)
Transcription machinery [BR:
manu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
129424250 (smarcb1b)
SWI/SNF complex
129424250 (smarcb1b)
Chromosome and associated proteins [BR:
manu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
129424250 (smarcb1b)
PBAF complex
129424250 (smarcb1b)
SWI/SNF complex
129424250 (smarcb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
129424250
NCBI-ProteinID:
XP_055036825
LinkDB
All DBs
Position
19:complement(26420420..26429942)
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPIKFQLEQDGDFYMIGSEVGNYLRMFRGSLYKRYPSLTRRLASVEERKKI
VASSHDHGYATLATSVTLLKASECEEIFDGNDEKYKAISISTEPPAYLREQKAKRSSQWV
PTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLD
MEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILDEQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIGIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgagtaaaacgtttggacaaaaaccaataaaatttcaacttgagcaagatggg
gacttttatatgatcggttcagaggtaggcaactatcttcgtatgttcagaggctctctc
tacaaacggtacccgtcgttaacgagacgactcgcatccgtggaggagagaaagaagatt
gtagcatcatcacacgatcatggttacgcaactttagccaccagtgtgaccctgctgaag
gcatccgagtgtgaggagatctttgatggaaacgatgagaagtacaaggccatctccatc
agcacagaaccaccggcgtacctcagggaacagaaggcaaagaggagcagtcagtgggtt
cccaccttaccaaacagctcccatcacttggatgcagtgccttgctcaaccaccatcaac
agaaatcgaatgggacgtgacaaaaaaagaacctttccgttatgttttgatgaccatgac
cctgcagttatccatgaaaatgcttcccagccagaggtcctggtgcccatccgcctggat
atggagatcgatgggcagaaactcagagatgccttcacctggaacatgaacgagaagctg
atgacaccggagatgtttgctgagatcttgtgtgatgacttggacctgaaccctcttgcg
ttcgtccctgccatcgcctctgccattaggcagcagattgaatcctatcccaccgacagc
attctggatgagcaatcagaccagagggtcattatcaagctaaacatccacgtggggaac
atctctctcgtggaccagttcgagtgggacatgtcagagaaggagaactcaccggaaacg
tttgctttgaagctctgctctgagctgggtctcggaggagagttcgtcaccaccatcgcc
tacagtatcagaggacagctcagctggcaccagaggacgtacgccttcagtgagaaccca
ttaccaacggtagagattggcattcggaacacaggcgatgctgaccagtggtgtcctctg
ttggagacactgacagatgcggagatggagaagaaaatcagagatcaggacagaaataca
aggcgtatgcgacgacttgccaacaccgcccccgcctggtag
DBGET
integrated database retrieval system
