Misgurnus anguillicaudatus (oriental weatherfish): 129424394
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Entry
129424394 CDS
T09481
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129424394 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
manu03041
]
129424394 (ddx46)
Enzymes [BR:
manu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129424394 (ddx46)
Spliceosome [BR:
manu03041
]
Complex A
U2 snRNP components
U2 related factors
129424394 (ddx46)
Complex B
129424394 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
129424394
NCBI-ProteinID:
XP_055037017
LinkDB
All DBs
Position
9:complement(1616870..1637839)
Genome browser
AA seq
1043 aa
AA seq
DB search
MGRESRHYRKRSGSRGRSGSRSKSRSPDSKRSKKDDRAGSRNRERSRRERSRSRDRRRSR
SRDRKRPRRSRSRDRRRSRSRDRRRSKSRSRGRSKEKVENGDQSTDKKKIKEEKEEEKVE
DQEFDQNTLEEEMRKRKERVEKWREEQRKKAMENIGELKKELEEMKQGKKWSLEDDDDDD
EEPLAPVDQEEEEEEEEEGDGEKDKVTETETATRMEEETGEELDPLDAYMEEVKEEVKKF
NMGTMKGGNDKKGGMTVTKVVTVVKTKKMPQTGKKKGELMENDQDAMEYSSEEEEVDLQT
ALTGFQTKQRKVLEPVDHKKIEYESFRKNFYVEVPELLRMTPEEVSEYRLELEGITVKGK
GCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIA
FLLPMFRHILDQRPLGEGEGPICVIMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGI
SEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVMDEADRMFDMGFEPQVMR
IIDNVRPDRQTVMFSATFPRTMEALARRTLSKPIEVLVGGRSVVCSDVEQHVIVIEEEKK
FLKLLEILGHYQEKGAVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDF
KNGVCRLLVATSVAARGLDVKHLILVINYNCPNHYEDYVHRAGRTGRAGNKGYAYTFITI
DQARYAGDIIKALELSGSPVPAELELLWTSFKEQQKAEGKSIKSSSGFSGKGFKFDETEH
ALANERKKLQKAALGLHDSDDEDTALDIDEQIESMFNSKKRVKDFSAPGGAAGAPAVGVT
VTAVSGQSSVAAPSAGNIQKLEMAKKLAQRIQVQKNLGAEAQDVMQQATNAILRGGTMIA
PSVSAKTIAEQQAEKINAKLNYTPVEKLDEERQAAEAADTVKRYEEELEINDFPQTARWK
VTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRL
IKEELIRLQNSYQPTSKGRYKVL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggacgagagtctcgccattacaggaagcgatcaggttcgaggggaaggtccggcagc
agatctaagagcagatcgccagactcaaagcgatccaagaaagatgatcgggctgggtca
cggaaccgcgagcgaagcagaagagagagatcacgcagccgagaccgccgaagatcacga
tccagagacagaaagagaccgaggcgctcaaggagtcgggacaggaggcggtcaaggagt
cgagaccgcaggaggagcaagagcaggagcaggggaaggagcaaggagaaggtggaaaat
ggagaccagtctacagacaagaagaaaattaaggaggaaaaagaagaggagaaggttgaa
gatcaagaatttgaccagaacactttggaggaagagatgagaaagagaaaagagcgtgtg
gagaaatggagggaggaacagaggaagaaagccatggagaacattggagaactcaaaaaa
gagctggaggagatgaagcaggggaagaaatggagtctggaggatgatgatgatgatgat
gaggagcctttagccccagtggaccaggaagaggaagaggaggaggaggaggagggagac
ggagaaaaggacaaagtcacagaaaccgagaccgccacacgtatggaggaggaaactgga
gaggagctggaccctctggatgcctacatggaggaggtgaaagaggaagtcaagaagttc
aacatgggcaccatgaaaggaggaaatgacaagaaaggaggcatgactgtgacgaaagtg
gtgaccgttgtgaaaacaaagaagatgccccagactggcaagaagaaaggagagcttatg
gagaacgatcaggatgccatggagtattcatcagaggaagaggaggtggatctgcagacg
gccctcacaggctttcagaccaaacaaagaaaagtcctggagcctgttgatcataagaag
attgaatatgagtccttccgcaagaacttctatgtggaagtgccggagctgctcaggatg
acacctgaggaggtgagtgaataccgcctggagctggagggcatcacagtcaaaggcaaa
ggatgtccaaagcccatcaaaacctgggtacagtgtgggatatccatgaaggttctgaat
gcactaaagaaacacaattatgaaaaaccaaccccaatccaagcccaggccataccggcc
atcatgtcagggcgcgacctcatcggcatcgctaagactggaagtggaaagactatcgcc
tttctcctacccatgtttcgccacatattagaccagagacctttaggggagggtgaaggt
cccatctgtgtgataatgacccccacacgagaactggctctgcagatcaccaaagagtgc
aagaagttttccaaacccttgggcttgagggtggtctgtgtttatgggggcactggcatc
agcgagcagattgccgagttgaagcgaggtgcagaaatcatagtgtgcacaccaggaaga
atgattgacatgttaggtgccaacagcggtcgagtcactaatctacgaagagtgacgtat
gtggtgatggacgaagcagaccgcatgtttgatatgggctttgaaccacaggtgatgcgt
atcatagataatgttaggccagaccgtcagaccgtgatgttctccgccactttcccacga
actatggaggccctggcccgaaggaccctgtccaaacccattgaggtgcttgtggggggc
aggagtgttgtgtgttcagatgtggagcaacatgtgattgtaatcgaggaggagaagaag
ttcctaaagctgctggagattctgggtcactatcaggagaagggcgctgtcatcatcttt
gtggataaacaggaacatgctgatgggctcctgaaagacctgatgaaagcatcttacccc
tgcatgtcattacatggaggcattgatcagtacgacagggacagcatcatcaatgacttt
aagaatggagtgtgccggctactggtggccacctcggtggcggcacgaggcctggatgtg
aagcacctcattctggtgatcaattacaactgtcccaaccactatgaagactacgttcac
cgcgccgggcgcacaggccgagcgggcaacaaaggatatgcatacaccttcatcactata
gatcaggcccggtatgccggtgacatcatcaaggctctggagctgtctggatctcctgtt
cctgcagaactcgagctgctgtggacgagcttcaaagaacaacagaaggctgagggtaaa
agtatcaagagcagcagcggtttctctgggaaaggttttaagtttgatgagactgaacat
gcactggccaatgaaagaaagaagctgcagaaggctgcattgggcctgcacgactcggac
gatgaagacaccgctctggatattgatgagcagatcgaaagcatgtttaactcaaagaag
cgcgtgaaggatttctcggctccaggcggggctgcgggagcgcctgctgtcggggtaacg
gtcactgccgtgtcaggtcagagtagtgtggcagccccatctgctggaaacatccagaaa
ctagaaatggccaagaaactcgctcaaaggatacaagtgcagaagaatcttggtgccgaa
gcccaggacgtgatgcagcaggcgacgaacgccatcctgagaggcggtacgatgatcgct
ccttcggtttcggccaagaccatcgcagaacagcaggcagagaagatcaacgccaaactc
aactacacacccgtggagaaactggacgaggagagacaagcagccgaggcagcagacact
gtgaagcgatacgaggaggagttagaaatcaatgactttccacagacggctagatggaaa
gtcacgtctaaagaggcccttcaacgcatcggcgagtattccgaggcggccatcactata
cggggaacatacttcccaccaggcaaagaacccaaagagggagaacgcaagatctacttg
gctattgagagtgctaatgagctggctgtccagaaggcaaaagcagaaatcacacgtctc
atcaaagaggaactcatccgcttacaaaactcataccaaccaaccagcaagggccgatac
aaggttttgtag
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