Misgurnus anguillicaudatus (oriental weatherfish): 129427464
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Entry
129427464 CDS
T09481
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a isoform X1
KO
K08131
collagen type IX alpha
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu04510
Focal adhesion
manu04512
ECM-receptor interaction
manu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129427464 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129427464 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129427464 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
manu00535
]
129427464 (col9a1a)
Proteoglycans [BR:
manu00535
]
Extracellular matrix (ECM) proteoglycans
Others
129427464 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
129427464
NCBI-ProteinID:
XP_055039947
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Position
21:complement(21641108..21657789)
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AA seq
684 aa
AA seq
DB search
MGTVRASLLGILLQLVLICSAQMGPPGPRGPPGPPGRPGFSGIDGIDGERGPGPGPVGPP
GPVGEKGRDGLNGLPGKPGADGLTGPRGEPGPLGPPGQKGEPGEPGARGPPGVGEDGEAG
ADGEDGLPGELGKVGPPGSQGPRGPIGTRGLPGPRGPPGVWDGRELCPNACTTGLTGHPG
LAGMKGHKGVKGESGEPGRQGHKGEEGDQGGPGEPGASGPPGKQGLIGITGMMGPKGDKG
VRGNVGDVGPQGIQGAPGDRGQRGKVGENGPKGAEGPLGMQGLSGLPGPKGETGLPGVDG
RDGIPGLPAVKGLPGKVGSPGEAGLQGLPGLPGIPGAKGHMGEKGNTGGPGVAGLIGNNG
KTGERGEQGEVGPVGPRGGPGERGHKGPDGPAGMPGARGNKGDQGLPGVPGPAGFSGQKG
DRGAVGFTGPKGEQGPPGEEGTTGEKGDLGDEGEPGEKGSTGKLGETGNKGPEGGRGQPG
PLGPPGGPGPRGMQGDRGAPGLPGGQGRRGRGPTDEAIKHVCMRVLQTHFAQMAASLTRP
ESGIPGLTGPPGPPGPPGPAGNNGFPGHPGNRGLPGLKGPPGLLGRKGPKGDQGDRGDRG
VTLQGPKGIPGPPGLPGNPGSPAYGRDGRDGLRGPVGVPGNPGVPGPPGPPGLNGYCESS
QCILQEVREPPALKESNMKGPDSL
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggggactgtacgcgcatctctgctggggattttactgcagttagtcctgatctgctct
gcacagatgggaccgccaggtccaagagggccaccaggacctccagggcgtcctggattt
tctggcattgatggcattgatggtgagaggggtcctggtcctggcccagttggcccaccg
ggccctgttggggagaaaggcagggacggattaaatgggcttccaggaaaaccaggagca
gacggtttgactgggccacgtggtgaacctggtcctcttggtccccctggacagaaaggt
gaacctggtgaacctggagcaaggggaccccctggtgttggagaggatggtgaagctggt
gctgatggggaggatggattaccgggagaacttggaaaagttgggcctcctggaagtcag
gggccgagaggtccaatcggcacaaggggactgcctgggcccagaggtcctcctggagtc
tgggatggtagggaattgtgtccaaatgcctgtactactggtttgactggccatccaggc
cttgcaggcatgaagggccacaaaggtgtcaaaggtgaatcaggtgaaccaggaagacaa
ggacataagggagaggaaggagatcaaggaggacctggagagccaggcgcgtctggacca
cctggtaaacagggtcttataggaatcacagggatgatgggccctaaaggtgataagggg
gttcgtgggaatgttggcgacgtgggtcctcagggtatacagggcgcccctggtgatcgc
ggacaaagaggaaaagtaggtgagaatggaccaaaaggtgctgagggacctctgggaatg
cagggactgagtggtttaccgggaccaaaaggagaaactggtttgcctggtgtggatggt
cgtgatggtattccaggactgcctgcagtaaagggtcttcctgggaaagttggctcacct
ggtgaggctggacttcagggacttccaggtttaccaggtattccaggagcaaaaggccat
atgggtgaaaaaggaaatactggtggtccaggtgtggcaggtctaattggaaacaatgga
aaaactggtgagcgtggtgagcagggagaggtgggaccagtcggaccaagaggtgggcca
ggtgagcgaggacataagggtcctgatgggcctgctggcatgccaggagcaaggggaaat
aaaggagatcaaggtcttcccggtgttccagggcctgctggcttttctgggcaaaaagga
gataggggtgctgttggttttactggtccaaaaggcgagcaagggccacctggtgaagag
ggtacaacaggagaaaagggagatttgggtgatgagggagagccgggtgaaaaaggatcg
acaggaaagctaggagaaacaggaaataaaggaccagagggtgggcgtggccagcctgga
cccctgggcccacctggaggacctggaccaagaggcatgcaaggagacagaggagcacct
ggattaccagggggacagggacgacgaggacgaggacccacagatgaggccatcaagcat
gtctgcatgagggttttgcaaactcattttgctcagatggcggccagtctgacgaggccc
gaatcgggcatccctgggttgacaggtcctccgggtcctcctggacctccagggcctgct
ggaaataatggcttccctgggcatcctgggaacagaggactgccaggtctcaaagggcca
ccaggtcttttgggcagaaaaggacccaaaggtgaccaaggtgacaggggagataggggt
gtcacattgcagggacccaaaggtatacctggaccaccaggtctcccaggtaaccctggt
agcccggcatacggtagagatgggcgtgatggcctacgaggaccggtaggtgttcctgga
aatccaggcgtgcctgggccacctggtcctcctggactcaacggatactgcgaatcatct
caatgcatccttcaagaagttcgagaaccaccagcattaaaggagtccaacatgaaggga
ccagacagtctatga
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