Misgurnus anguillicaudatus (oriental weatherfish): 129430840
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Entry
129430840 CDS
T09481
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129430840 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129430840 (xab2)
03041 Spliceosome [BR:
manu03041
]
129430840 (xab2)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129430840 (xab2)
Spliceosome [BR:
manu03041
]
Complex B
Other components
Prp19-related factors
129430840 (xab2)
Complex C
129430840 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
TPR_16
NRDE-2
ARM_TT21_C
ARM_TT21
TPR_1
LTN1_E3_ligase_6th
DUF4515
Motif
Other DBs
NCBI-GeneID:
129430840
NCBI-ProteinID:
XP_055044399
LinkDB
All DBs
Position
19:13631612..13639872
Genome browser
AA seq
848 aa
AA seq
DB search
MPTPGGKANVIFEDDDLPYEEEIIRNPYSVKCWIRYLEHKQNAPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQSK
ITRSRRTFDRALRALPVTQHTRIWPLYLRFSRNLPLPETAIRVYRRYLKLSPENAEEYID
FLRSAGRLDEAALRLAAIVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMENTSESGQDEDEDIDLELRLARFEQLIIRRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGQPRQIINTYTEAVQTVDPMKATGKPHALWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFMDRYGGKKLERARDLFEQALDGCPPKYAKTIYLLYAKLEEE
YGLARHAMAVYERATSAVEPEERHQMFNIYIKQAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRMTALFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNAGGTVSDLAPGQSGVDDMRLLEQKAQQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDDEDADDGEPDEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccaactcctggcggaaaagccaacgttatattcgaagatgatgatttgccatatgaa
gaagagatcatcaggaatccgtattcagtcaagtgctggatacggtaccttgaacacaag
cagaatgctcctaaatctgtgctcaatatgatctatgaaagggctttaaaagagctacct
ggcagttataagttatggtacaactacctgagagagaggaggaaacaggtgaaaggcaag
tgtgtgacagatccagcctatgaggaggtgaacaactgccatgagagagctctggtgttt
atgcacaagatgccgaggatttggatcgattattgtcagttcatggtgtctcagtcaaaa
attacacggagcagacggacgtttgatagggcattaagagcacttcccgttacccagcat
actcggatttggcccctgtaccttcgcttttcccgtaacttacctctgccagaaacagct
atccgtgtttacagacgttacctaaagttatctcccgagaatgcagaagaatacatcgat
ttcttgcgttcagctggccgtctggatgaagctgcactacggctggcagccattgtcaat
gatgaaaactttgtttctaaagagggcaagtctaattatcagctctggcacgaactctgt
gacctcatctcacaaaacccagacaaggtgacgtcactaaacgtgggagccattattcga
ggaggtctcactcgctttacagaccagcttggcaaactctggtgttccctggctgattat
tacatccgcagtggacactttgagaaagcgcgtgatgtatatgaggaagccatcctgacc
gtagtcaccgtgcgagacttcacacaggtgttcgacagctatgcgcagtttgaggagagc
atgatcgccgccaagatggagaacacatctgaatcgggacaggatgaagatgaagacatc
gacttggagttacgcttggcacgattcgagcagctgataattcgacgaccgctcttgctg
aacagcgtcttgctgcggcagaacccgcacaacgttcacgagtggcacaaaagggttaaa
ctttatgacggccaaccacgacagatcatcaacacgtacacagaggccgtgcagacggta
gacccgatgaaggccacaggaaaacctcacgcactttgggtttcctttgccagattctat
gaggacaatgagcagctggatgatgctcggactatctttgagaaggccaccaaggtgaat
tacaaacaggtggatgatcttgcagcagtgtggtgcgagtacggagagatggagctgaga
cacgagaactatgatcaggctctacgcatactaaggaaagcaacagctattccagcaagg
aaagcggagtatttcgattcatccgaaccggtgcagaatcgagtgtacaaatcacttaaa
gtgtggtccatgcttgcagacttagaagaaagtcttggcacattccagtctacgaaggca
gtgtatgatcgcatcattgatctcaggattgccacacctcagatcatcatcaactatgcc
atgttcctcgaggaacacaactactttgaggacagctttaaagcttatgagcggggcatt
gccctctttaagtggcccaatgtccatgatatctggaacacgtacctcaccaagttcatg
gatcgttatggaggcaagaagctggagagagcgcgagatcttttcgagcaagcactggat
gggtgtcctcctaaatacgccaaaacgatatacctgctgtatgctaagctggaggaagag
tacggtctggcgcgacatgccatggctgtgtacgagagagccacttctgctgttgaacca
gaggaacgccatcaaatgtttaatatctacatcaaacaggcagcagagatttatggagtc
acacacacaagagccatctatcagaaagccattgaggtcctaccagatgagcacgccagg
gacatgtgtctgcgctttgctgatatggaaagcaaacttggagagattgaccgagcaaga
gccatctattcctactgctcgcagatctgtgatccaaggatgaccgctcttttctggcaa
acctggaaggagtttgagattcgtcacgggaacgaggacacaatccgagagatgctgcgg
ataaaacgcagtgtgcaggccacctacaacacgcaggtcaacttcatgtcatctcagatg
ctaaaggccaccaccaatgccggtggaacagtgtcagatcttgctccagggcagagcgga
gtggatgacatgaggttgttggagcaaaaggcccagcagcttgctgcagaagctgagcag
gacaaacccaaacctaaagacaagatccttttcgtcaggagtgacacatctcgcagcgag
ctcgccgaactggccaaacaagctaatccagatgagattgacattgatgatgatgatgag
gatgcagacgatggagaaccagatgaggtccagctagaacagaagtccgttcctaccgct
gtctttggaggactaaaggatgactga
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