Misgurnus anguillicaudatus (oriental weatherfish): 129431713
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Entry
129431713 CDS
T09481
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03013
Nucleocytoplasmic transport
manu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129431713 (upf2)
03015 mRNA surveillance pathway
129431713 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129431713 (upf2)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129431713 (upf2)
mRNA cycle factors
P-body specific factors
129431713 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF1722
Motif
Other DBs
NCBI-GeneID:
129431713
NCBI-ProteinID:
XP_055045693
LinkDB
All DBs
Position
1:10556332..10574269
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AA seq
1258 aa
AA seq
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MPERKKSVNMDEKEPSNKDRDAERQAGTSREKSKDESKMSGKKDGGKTAEEKKRRAEEER
KRKEEKERKKKEEEKQKAEEEQRKKEEDEKRQQEEEEKRLLEEEAKRQKEEQAAQLKEKE
EAEQLHQEAWERHHSRKDLRGKNQHAQETRPEEAFFSRLDSSLKKNTAFVKKLRTLTEQQ
RASLSQDFNSLNLSKYIGEAVSSMVEAKLKISDVGCAVHLCSLFHQRYAEFAPLLLAAWK
RNFEARKEEKTPNVSKLRTDLRFIAELTVVGLFTDKEGLSLIYEQLKNIIGVDRETHTHV
SVIISFCKHCGDDVAGLVPRKVKNASEKFGLSFPPSQIISAEKQQPFQNLLREYFTSLTK
HLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTLADLLDENMP
ELPQDKTVQEDHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVPAILFKD
NEKSSQIIKEEREGNSTEELEMELEALDITDDPLDLDVADETESEELAKKILDEQEQEDE
EASTGSHLKLIVDAFIQQLPNCINRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRL
DLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIGELAKF
KMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPDSHLRTSVLLDQMMRKKQ
AQHLDVRYITMVENAYYYCNPPPMEKTVRRKRPPLQEYIRKLLYKDLSKVTTEKVLRQMR
KLPWNDSDSKSYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGMLEDIRLG
MEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNADGSPSILDPPEHL
FRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYVWWKKSLDVWTKDQPFPIDIEYMI
TDTLELLRPKMKLCSSLDEACGQVTQLEREFLIKLGLEKDGRSSSMMGENEALDEEDDDD
EDEGGAETEEQSGNESEMNDPEEEEGSENEEEEHEEEEENTDYLTDSNKENETDEENNEV
TIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKSQLKKSPA
PSCTAEADADISDTMPFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQEERMRMKK
LTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacgtaagaaatctgtaaacatggatgaaaaagagccgagcaacaaggacagg
gatgcggagagacaggctggcacatcccgcgagaagagtaaagacgagagcaaaatgagc
ggaaagaaagacggaggaaagacggcggaagagaagaagagacgagcggaggaggagagg
aaaaggaaggaggaaaaggagaggaagaagaaagaggaggagaagcagaaagctgaggag
gaacagagaaagaaagaggaggatgaaaagagacagcaggaggaggaggagaaaaggctg
ctggaagaagaagctaaacgacagaaagaggagcaggctgctcaactcaaggagaaggag
gaggctgaacagctccaccaggaggcgtgggaacggcaccatagcaggaaggacctccgt
ggaaagaaccaacacgcacaagagacgcgtccagaggaggctttcttcagccgtctagac
tccagtctgaaaaagaacacagcgtttgtcaagaagctccgcacgctcacagagcagcag
cgcgcctccctctcgcaagacttcaactctctcaaccttagcaagtacatcggtgaggcc
gtgagctccatggtagaggccaagctgaaaatctccgacgtgggatgcgccgtgcacctc
tgctccctgttccaccaacgctatgcggagtttgctccgctgctgctggctgcgtggaag
aggaacttcgaggccagaaaagaggagaagacgcccaacgtgagcaagctgcggactgac
ctgcgcttcatcgccgagctcaccgtcgtggggctgttcacggataaggagggtctctcg
ctcatctacgagcagttgaaaaacatcatcggtgtcgaccgagagacgcacacccacgtg
tccgtcatcatcagcttctgcaagcactgcggagatgacgtcgccggcctggtgccccgg
aaggtcaaaaacgcttcggagaagttcggcttgtctttcccgcccagtcagatcatcagt
gcagagaaacaacagccgttccagaacctgctgagggaatatttcacctcgctcaccaaa
cacctgaagaaagaccacagagaattacaaaacatcgagagacagaacaggcgtattctg
cactccaaaggagagctcagtgaagaccgacacaagcagtatgaggagttcgccacctcc
tatcagaagcttttggcaaacacgcagactctggctgatctactggatgagaatatgcct
gaacttcctcaagataaaactgtccaggaagaccacggtccaggcattgatatcttcact
ccaggaaagccaggggagtatgacctggagggcgggatttgggaggacgaggatgctcgt
aacttctacgagaatctggtggatctgaaagcgtttgttcctgccatccttttcaaagac
aatgagaagagcagtcagatcatcaaagaggagcgtgaggggaacagtacagaggagttg
gagatggagctggaggctctggacatcaccgatgaccctttggatctggacgtagctgat
gagactgagagtgaagaactggcaaaaaaaatactggatgaacaagaacaagaggatgag
gaggccagcaccggctctcatctcaaactcattgtggatgccttcatccagcagctgcca
aactgcatcaaccgagacttaattgataaggccgcgatggacttctgtatgaatatgaac
acaaaatcgaatcgcagaaagttggttcgggctctcttcactgtgcctaggcaaaggctg
gatcttttgccgttttactctcgcctggtggccactctgcacccgtgtatgtctgatgtg
gcagaagatctctgctcgatgctcaagggagatttccgcttccatatcagaaagaaggac
caaattaacatcgagaccaagaataagacggtgaggtttatcggggaactggccaaattc
aagatgttttccaaaaccgacacactgcactgtctcaagatgttgctgtctgatttctct
catcatcatatcgagatggcctgcacactgctggagacgtgtggacgatttctcttccgc
tcaccagactctcacctgcgcaccagcgttttactggatcaaatgatgcgtaagaaacag
gctcagcatctggacgtgcgttacatcacgatggtcgagaacgcgtattactactgtaac
cctccgccaatggagaagacggtccgcaggaagagaccgccgctgcaggagtacatccgc
aaactcctctataaagatttgtcaaaggtcaccactgaaaaagtgttaagacagatgagg
aagttaccgtggaatgactctgacagtaaaagttatctgatatgctgtatggtcaacatt
tggaacgtcaaatataacagcatccactgcgtggccaatctgctggctggattagtggcc
tatcaggaggacgtgggcattcacgtggtggacggcatgctggaggacatccgcctcggg
atggaggtaaaccagcccaagtttaaccagcggcgaatcagcagcgctaagtttctgggc
gagctgtacaactatcgcatggtggaatctgccgtcatcttccgaactctcttctccttc
atctcgttcggcgtgaacgccgacggttccccgagtattctcgatccccccgagcatctg
ttccgtatacgtctggtctgcaccctcctggacacctgcggtcagtactttgaccgtgga
tccagcaagaagaagcttgactgcttccttatctacttccagaggtacgtctggtggaag
aaaagtttagacgtgtggactaaagaccagccgttccccatcgatatcgagtacatgatc
accgacacactggagctactgcgacccaaaatgaagctgtgctcgtctctggatgaagct
tgtggtcaggtcacacagctggagagagagttcctcattaaactgggtctggaaaaggac
ggccgctcctccagcatgatgggtgagaacgaggctctggatgaagaggacgatgatgat
gaagatgaggggggtgcagagacagaggaacagtctggaaacgagagcgagatgaacgac
cctgaggaagaggagggctcggagaatgaagaagaggaacatgaggaggaagaggagaac
actgactatctgacagactccaacaaagagaatgagacagacgaggagaacaatgaggtg
acaatccgcggtggcgggctcaaacacgtggcgtgtgcagaggatgaagattttatccag
gcgctggacaagatgatgctggaaaacttgcagcagcgcagtggagaggcagtgaaggtc
catcagctggatgtggcgattccactgcagttaaaaagtcagctgaagaaaagccccgcc
ccctcttgtacggcagaggctgacgctgacataagtgacaccatgccgtttgtcatgctc
acacggaaaggcaacaaacagcagtttaagatcctgaatgttccactatcgtctcatctg
gcagcaaatcacttcaaccagcagcaggccgagcaggaggagcgcatgcgtatgaagaaa
ctcacgctggacatcaatgagcgtcaggaacaggaggattatcaggagatgatgcagtct
ctcgctcagaggccagcgcccgccaacacaaacagagagcgtcgaccgcgataccagcat
ccgaaaggagcaccgaacgccgaccttatattcaagaccggtggcaggagacgctga
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