Misgurnus anguillicaudatus (oriental weatherfish): 129431864
Help
Entry
129431864 CDS
T09481
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
manu03016
]
129431864 (rtcb)
Enzymes [BR:
manu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
129431864 (rtcb)
Transfer RNA biogenesis [BR:
manu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129431864 (rtcb)
Prokaryotic type
tRNA splicing ligases
129431864 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
129431864
NCBI-ProteinID:
XP_055045950
LinkDB
All DBs
Position
1:10591301..10599894
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIHKNCWRIKKGFVPNMQVEGIFYVNEPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPTKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMERAMKQDNITVNDRQLACARIMS
REGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVDTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctcttataacgatgagctccagtatctggataaaattcacaagaactgctgg
aggatcaagaaaggtttcgtgccaaacatgcaggtggagggaattttctatgtaaatgag
cctttggagaagctgatgtttgaagagttgagaaacgcttgtcgtggaggaggttttgga
ggatttctgcctgccatgaagcaaattggaaatgttgctgctcttccaggaattgtacat
aggtctattggattacctgacgttcactctggatatgggtttgctattggaaacatggct
gcgtttgacatggacaatccagacgcggtcgtctctcctggtggtgtggggttcgatatc
aactgtggcgttcgactgctgcggacaaacctagatgagggcgacgtgcagccggttaaa
gagcagctggcacagtccttgtttgaccatattcctgtcggcgtcggatccaagggcgtc
attccgatgagtgcaaaagacctggaggaggctctggagatgggtgtggattggtcattg
agggagggatacgcctgggccgaggataaagaacactgtgaggaatacggcaggatgctg
caggccgatcccacgaaagtctcttccaaagccaagaagagaggcctgccacagttgggt
acactgggtgcaggaaatcactacgctgaaattcaggtggtagatgagatctataatgac
tatgcagcaaagaagatgggcatcgaccacaagggacaggtgtgcgtgatgatccacagc
ggcagtcgaggccttggccatcaggtggcgacagatgctctggttgccatggagagggcc
atgaagcaagataacatcacagtaaatgatcgtcagctggcttgtgctcgcatcatgtct
cgtgaaggtcaagactatctgaagggaatggccgccgcgggcaactacgcctgggttaac
cgatcctcaatgactttcctcactcgccaggccttttccaaagtgttcaacaccacaccg
gatgatctggacatgcacgtcatctacgacgtctcgcacaacatcgccaaggttgaggag
cacatggtggatggtaaacagaagacacttctggtgcacaggaagggctcgacccgagcg
tttcctcctcatcatccactcatacccgtcgactatcagttaaccggtcagccagttcta
attggaggcactatgggcacctgtagttacgtgttgacgggaacagagcagggcatgacc
gagaccttcggtaccacatgtcacggcgcaggtcgagcgctgtccagagccaaatccaga
aggaatctggacttccaggatgttctggataaactggcagacatgggaatcgctatcaga
gtcgcatcacccaagctcgtgatggaggaggcaccggagtcctacaagaatgtcacggac
gtggtcgacacgtgtcacgatgcaggtattagtaagaaggccatcaagctccgccccatc
gctgtaattaaaggttga
DBGET
integrated database retrieval system
