Misgurnus anguillicaudatus (oriental weatherfish): 129432751
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Entry
129432751 CDS
T09481
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03015
mRNA surveillance pathway
manu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129432751 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129432751 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129432751 (cpsf6)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
129432751 (cpsf6)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
SCP_3
Motif
Other DBs
NCBI-GeneID:
129432751
NCBI-ProteinID:
XP_055047323
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All DBs
Position
1:9905675..9916726
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AA seq
548 aa
AA seq
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MADGVDHIDIYADVEEDFNQEPDYPVHEQIDLYDDVISPSANNGDAPEDRDYLDALPAPG
GAEGTKGAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRAN
GQSKGFALVCVGSDASSRKLMDLLSKRELHGQNPLVTPCNKQSLSQFEMQSRKSEQGTQS
GQMSGEGKAGPPGGGLRAGFPPGRGGRGRFPGPPGGGGDRFPGPIGPGGPPPHFPGMQGP
PRPPSGPPGPPGPPGPPPHGQGLMPPLGGPPNRGDRPPPPVMFPGQFGQPPMGPMPPGPP
PPGYCPPPGPPPPQQGPPPPGPFPPRPPGPLGPPLGLAPPPHMQGPPPGGPPPAPHVNPA
FFPPPGNNNMPSSDSRGPPPGDPYGRPPYDRDYGPGGRDMDAARTPLSEAEFEEIMNRNR
AISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIES
KSYGSVSSRRERSRERDHSRSREKSRRHKSRSRDRHEDYYRERSRERDRHRERDRERDRE
REREYRHR
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgttgaccacatcgatatttacgctgatgttgaagaggactttaatcag
gaacccgattatcctgttcatgagcagattgacctgtatgatgatgtaatctcaccatct
gccaataatggggacgcacctgaagatcgagattacctggatgccctacctgcacctgga
ggtgctgagggtacaaaaggggccccgccaaatgtcgtctacacttacactggcaaaaga
attgctctgtacataggcaacctcacatggtggaccactgatgaggatttgacagatgct
attcgttcgataggcataaatgatgtgctggagatcaagttttttgagaacagagcaaat
gggcagtcgaaaggatttgccctggtctgcgtgggttcagatgcctcgtccaggaagcta
atggatttgttgtcaaagcgcgaactgcacggacaaaacccgctcgtcaccccatgcaac
aagcagtcgctcagccagtttgagatgcagtcgcgaaaaagtgagcaaggtacacagtct
gggcagatgtctggagagggtaaagctgggcccccaggtggggggctgcgtgctggcttt
ccccccggcagggggggtcgagggcgctttccaggcccacctggaggtggaggtgatcgt
tttcctgggccaattggtcctggtgggccgcctccacacttcccaggcatgcaaggacca
ccccgtcctccctctggccctcctgggccaccaggaccccctgggcctccaccacacgga
caagggctgatgccccctctcggtggacctcctaaccgaggtgaccgtccccctccacca
gtcatgtttcctggtcagtttggtcaacctccaatgggtcctatgccacctgggccaccc
ccaccaggctattgcccgccaccaggaccacctccccctcaacaggggccaccgcctcct
ggaccatttcctccccgtcctcctggacccttaggaccccctcttggcctcgccccccca
cctcacatgcagggacctccacctggaggtccaccacctgctcctcacgtcaacccggcc
ttctttcctccacctggaaacaacaacatgccatcgtctgacagcagagggcctccacct
ggagacccgtacggccgcccaccatatgacagagactatggccctggtggcagggatatg
gatgcagctcgtactcccctgagcgaagcagagtttgaggaaatcatgaatcgaaacaga
gcgatctccagcagtgccatttctagggccgtatcggatgccagcgcagctgattacggc
agtgctatagagactctggtgacggccatttctttgatcaagcaatcgaaggtttctgct
gatgaccgctgcaaggttctcatcagctcgctacaggactgcttgcatggaattgagtcc
aaatcctatggatcggtttcaagtaggcgggaaaggtcgagggagagagaccacagtcgc
tctcgtgagaagagccgccgtcacaagtctcgcagccgtgaccgtcatgaggactattac
agggagcgcagtcgggagagggaccgccatcgtgagcgcgaccgtgagagagaccgagag
cgtgagcgggaatatcgccaccgttag
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