Misgurnus anguillicaudatus (oriental weatherfish): 129432806
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Entry
129432806 CDS
T09481
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
manu04121
]
129432806 (pdzrn4)
Enzymes [BR:
manu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129432806 (pdzrn4)
Ubiquitin system [BR:
manu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
129432806 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
129432806
NCBI-ProteinID:
XP_055047400
LinkDB
All DBs
Position
1:complement(25467020..25557186)
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AA seq
785 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGRDFSKSGHEGAVEAMRKDPIVVQVLRRGHPSRNQ
SNLQEVCVVDVCTQTDITFEHIMALAKMRPSTPPVPDICPFLLSDSCHSIQTVDHEYFDC
PEYVSGTQAEVERADEFECEEVELCRMNSQEKLGLTLCYRTDEDEEDAAIFVGQVEPNSI
AARDGRIRQGDRILQINGHDVLDKEEAVALLSNENSRSIVLLVTRPEGQMDGSWLDEDHH
DFLEELKMEILEEQKKEGILQMKRSKRLEEEVSTDTATCSSSILEKDSGIKCSFEETSEQ
ETFSHAQTRTQKQLLDKWGAGSRSVPMDTISFEPGQDERISESGVECDHFQQLLELKCQI
RNGGECGLVYRRSSTIECSLTEQGGSGVARELHMLNEELRSIERECQSIMQAHQLRRSKN
DSPRTDKENRLRRGKLADINEHPERFQGEKLRDKDSSSAYNTAESSRSTPLGTEGSPDHS
LHHRVHLTNQKNLQSPHHIQSPYNSPILTFPSQSRAHTYTTSTTPLQIPITSPGSQGPSQ
AFSSSLEQSPSNPSESDPALPADDERCERNRNRVAAALYHPSPYQSNTATTQLPTTRRYQ
SYLQLLQQHSSSSLEYSQSQLSLLSLRGRPGPSQSGRLEWKVKVRADGTRYVARRPARDR
ILRERALRIREERSGGMTTDDDAVSELKMGRYWSKEERKQQLARAREQRRRREFMQKSRL
ECLKESVGTASGEVSILELSHKKMLKKRNKKILDNWMTIQELMSHGARAPEGTKVHNAFL
SVTTV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaacctgtgtactttgcagaagagagaggaacattacaagctgctgtatgag
atcgcgcaggtgaatgggcgtgacttctcaaagtccggacatgaaggggcagtggaagcc
atgcggaaggacccaatagtggtgcaggtgctgaggcggggtcacccgtcccgaaaccag
agcaacctacaggaagtctgtgtggtggacgtatgcactcaaacagacatcaccttcgaa
cacatcatggctctggccaaaatgagacccagtaccccacctgtgccggacatctgtccc
ttcctgctgtctgacagctgtcattccattcagacagtggatcatgaatatttcgattgt
ccggagtacgtatccggcactcaggcagaagtggaaagggccgatgaatttgaatgtgag
gaggttgagctctgtcgaatgaacagccaggaaaaactgggtctgaccctctgttaccgc
accgatgaggatgaagaagatgcggccatttttgttggacaggttgagccaaacagcatt
gccgcaagggatggacggatcagacaaggcgacagaattttacagataaacggtcatgac
gtgctggacaaggaagaggctgttgctcttctctcaaatgaaaattccagatccatagtg
ttgcttgtcaccagacctgaaggacagatggatgggagctggcttgatgaagaccaccat
gacttcctagaggaactgaagatggagattttagaggaacagaaaaaagaaggaatcctt
caaatgaagcggtccaaaagacttgaggaggaagtatctacagatacggcaacctgctct
tctagcattctagagaaggacagtggcataaaatgcagctttgaggagacctctgaacag
gaaaccttctctcacgcccaaacacggactcaaaaacaacttctggacaaatggggtgca
ggctcacgttcggttcctatggacaccataagctttgagccgggtcaggatgaaaggata
agtgagagtggagtggaatgcgaccacttccaacagctcctggagctcaagtgccagatc
cggaatggtggggaatgcggattggtgtacaggcgaagcagtactattgaatgcagcttg
acggagcaaggtggaagcggcgtggcgcgggagctgcatatgttaaacgaggagctacgc
agcattgaacgcgaatgccagagcatcatgcaggcacaccagctccgccggagcaaaaac
gactcaccccgaacagataaagaaaatcgcttgcggcgtggcaagcttgcagatattaat
gagcatcctgaaagatttcaaggggagaagctgagagataaagacagctctagtgcctac
aacacagcagaaagctcccgctcaacgccactgggaacggaaggatcacctgaccactcg
ctacaccatcgcgtccacttgaccaatcagaagaacctgcagagtccccaccacatacag
agtccatataatagccccatcttgacatttcccagccaaagtcgtgcccatacttacacc
acctcaacaacccctttacagattcccatcaccagtcctggttcacaaggtcccagccaa
gccttctccagcagcctggagcaaagccccagcaacccctcagaatctgacccagccctc
ccggcagatgatgaacgttgcgaaaggaaccgtaacagagtcgcagccgctctgtaccac
ccttcaccctaccaaagcaacactgcaacaacccagctccccaccacacgacgctaccag
agctacctacaactcctacaacaacattcctcttcttctctggaatactcccagagccag
cttagccttctcagcctccgtggacggcccggtccctcacaatccggccggctagaatgg
aaggtcaaagtccgggcagatggaacgaggtacgtggcacgcagacccgcacgagaccgc
atcctacgggagcgagccttgcggatccgtgaggaacgtagcggggggatgactacagat
gacgacgcagtcagtgaactgaagatgggtagatattggagcaaagaggaacgcaagcag
cagctagcacgggcgagagagcaacgacgcaggagggagttcatgcagaaaagcaggtta
gagtgtctaaaagagtctgtggggacagcgagcggggaagtgagcatcctggagctcagc
cataagaagatgctaaagaaacgaaacaagaagatcctggacaactggatgaccattcaa
gagctaatgagccacggggcacgagcgcctgagggcaccaaagttcacaacgccttcctc
tcagtcaccaccgtttaa
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