Misgurnus anguillicaudatus (oriental weatherfish): 129434159
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Entry
129434159 CDS
T09481
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
manu03000
]
129434159 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
manu03310
]
129434159 (roraa)
Transcription factors [BR:
manu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
129434159 (roraa)
Nuclear receptors [BR:
manu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
129434159 (roraa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
129434159
NCBI-ProteinID:
XP_055049012
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Position
6:complement(23717535..24117308)
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AA seq
519 aa
AA seq
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MESPPDPASDPGNGVSEPVTPVRETPVNLETLRKAEHQAPVRRQSCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
TYGLTTNGLTELHDDLSGYMNGHTPDGTKPDSGVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFTSGSGFFPYCSFTNGDTSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVESYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDPQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcgagcgacccgggcaacggcgtctcagagccggttacc
ccggtcagggaaaccccggtaaacctggagaccctccgcaaagctgagcaccaagccccg
gtgcgcaggcagagctgctccagtaccaacagaggtatttcagtaacaaagaagacacac
acttctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggtgtgataacgtgtgaaggctgcaagggtttcttcaggaggagtcaacagagcaat
gcggcgtattcatgcccgcgtcagaagaactgcctgattgaccgcaccagccgaaatcgc
tgccaacactgcaggctgcagaagtgtctggccgtgggcatgtcacgtgatgcggtgaag
ttcggccgcatgtcgaagaaacagcgggatagcctgtatgcagaagtgcagaaacaccgg
ctccaacaacaacagcgggaccaccaacagcagccgggcgaagccgagcccctaacccca
acctatggcctcacaaccaacggtctgaccgaactccacgatgacctgagcggctacatg
aacggccatacacctgatggcactaaaccggactcgggcgtcagcagcttctacctggac
atccaaccttcacccgaccagtccggcttggacatcaatggcatcaagccagagcccatt
tgcgacttcacctcaggctcaggcttcttcccgtactgttccttcaccaatggagataca
tcccccactgtttccatggctgaactggagcatctggcccaaaacatttccaagtcccat
atggagacatgtcagtacctgagagaagagcttcagcagatgacctggcaggcatttctt
caggaagaagtggagagctaccagaacaagcccagagaagtcatgtggcagttgtgtgcc
attaaaataacagaggccattcagtacgtggtggagtttgccaagcgcatcgatggcttc
atggagctctgtcagaatgatcagatagtgcttctcaaagcaggctctttggaggtggtg
tttgtcagaatgtgccgtgccttcgaccctcagaacaacacagtctatttcgacggaaag
tatgcagggcctgacgtgtttaaatcgttaggctgcgatgatttgatcagctctgtcttc
gagtttgggaaaaacttgtgttctatgcacctctctgaagacgagatcgccctgttctct
gcctttgtgttgatgtctgcagatcgatcttggcttcaggagaaggtgaaggtggagaaa
ctccagcagaaaatccagctggcactccagcacgttctgcaaaagaaccacagagaggac
ggcatactgacaaagttgatatgcaaagtctccacactgcgagctctgtgcagccggcat
acagaaaagctgacggcgttcaaagcaatatacccagacattgtgcgagcccacttcccc
ccattgtacaaggagttgttcggatcagactttgagcagtccatgcccgttgacgggtaa
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