Misgurnus anguillicaudatus (oriental weatherfish): 129435311
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Entry
129435311 CDS
T09481
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129435311 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129435311 (smg5)
03032 DNA replication proteins [BR:
manu03032
]
129435311 (smg5)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129435311 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
129435311 (smg5)
DNA replication proteins [BR:
manu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
129435311 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
129435311
NCBI-ProteinID:
XP_073728608
LinkDB
All DBs
Position
10:35794223..35824403
Genome browser
AA seq
1089 aa
AA seq
DB search
MSGPGQDSEPEAKVLHIKRLYRAVVETVHKLDVIISSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFFQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSASPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVAPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFDGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPHPTHGSQSTGEEEEEHDSICSVLPDSLIFKMVVTC
LMVVHRLKRGASKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESDVTALRTDNTDEPE
ARDSSEAPSEDRTLQNGSLEDDEEKENDEEQPTGNGSTAEVKKALEKKRSAEEKQKQKRK
FSRLSMLRRRRCAHKEDESDLSEGFESDEEEDEEDAVPVDGLGSSRVQMNSLAREGRKEP
LAVDGRWESGSEEEEGGTAFDVETDSDMNSQESRSDLEDIEDAENAPQHQQPEEDEQPQP
SREENSTPPASNGPLVTNDASISSNLQAMSSQLFQSKRCFRLAPTFSNVLLRPPATTNPT
SDSNPKPSQEITPLPEKTSSNMSPEIVNGTNDNDPDSDSEGSVHSNQSIPSEKTLSERLE
ILTNQDLIQIVKVFLDWLRTNTDIILMCAQSSQSLWNRLSVLLNLLPEGTKILEADLGLN
KEVTELLNESERPGLVQTLLLPEDLALRHLPALSSAHRRLDFTSQRPSLSPLEECVVRLG
CIRSFGHFLTNLQGNVLHFNPEAGIFTSISQSEQENLIQQAKAQFRMAEEEARRNRLMRD
MAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTSALCQHLGPIRQLAASGCFIIIIPRT
IIDGLDMLKKENAGARDSIRFLETEFRKGNRYIRCQKESGRSFERDKLKRQDTEAWHLYK
MVDSCRQLTGSQKSGDEDTAGMVTILTGHSLEEMTERSASMKAAVQAVGSAGMELKNITE
FYQQWKEMG
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgggtcaggacagcgagcctgaggccaaagtgcttcatattaaacgtctg
tacagggctgtggtggaaacggtgcataagttggatgttataatcagcagcaagtcgtcc
tatagggaggtcttcaaacctgagaacatcagcttgaggaacaaattgcgggaactttgt
gtcaagctgatgttcctgcacccggtggactatggacgcaaggcagaagaactgctgtgg
agaaaggtctactatgaggtcattcaggtcatcaagaccaacaagaagcatattcatagt
cgcagtgctttggagtgcgcctacaggacccatttgattgctggggtgggcttctttcaa
cacctgctgctctacatccagtcacattatcagctggagctacaggactgcatcgactgg
acgcacgtcactgacccactcattggtcgtaagaaaccggtctcagccagccctaaggag
atggagtgggcccagatggcttgtcacaggtgccttgtgtacttgggagatctcgcgcgc
taccagaatgaactggcgggagtggaagcggagcagctggccgaacgcttttatcaccag
gccctgtctgtcgctcctcacgtcggaatgccgtttaatcagttgggtacattggctgga
agtaaattttataatgttgaagctacttactactacttgcgctgtattcagtcagagact
ccctttgatggtgcttatgggaatttaaagcgtctttttgacaaggcagccaagatgtac
catcaggtgaagaaacaagagatgaagaaactgtcaccatcgcgccagaggtcaaaagac
atcaagagattgctggtgagcttcatgtatttgcaaagtctgttgcagcccaagaacagt
ctgatggagactgagttgacgtcactgtgccagtctgtgctggaggactttaatctggtg
ctgttctacctgccacatcctactcacggcagccaatcaaccggcgaggaggaggaggag
cacgactccatctgctccgtgttacctgacagcctcatattcaagatggtggtgacttgc
cttatggtagtgcacaggctgaagcgaggagcctcaaagcagtacagtgcctccatcgcc
ttcacattggctctgttctcacatctggtcaatcatgtgaacattcgactgcaagctgaa
ctggaggagggcgagagtgatgtcacggccctgcgcactgataacacggatgagcctgag
gccagagattccagtgaagctccctctgaagacagaaccctgcaaaacggctccctggag
gatgacgaggagaaagaaaatgatgaagagcagcctacagggaatggaagtacggcggag
gtaaagaaagcactggagaagaagaggtcagcagaggagaagcaaaaacaaaagaggaag
ttctcgcggctatccatgctccgccgcagacgatgtgctcacaaggaggacgaaagcgac
ctgagcgaaggctttgagagtgatgaagaggaggatgaggaagatgccgtgccggtcgac
ggtctgggatcctccagggtccagatgaactctttagcgagagaagggcggaaagaaccg
ctggcggtggatggccgctgggaaagcggttcggaggaagaagaagggggcacggctttt
gacgtcgagacggattccgacatgaacagtcaagaatctcgttcggacctggaagacata
gaagatgcagagaatgcgccgcaacatcagcaaccagaggaagatgagcagccacaacca
tccagggaagaaaactcaaccccgccagcatccaatggccctctagttactaatgatgcc
agcatcagcagtaacctacaggccatgtcttctcagcttttccagtccaagcgctgcttc
cggcttgctcccactttcagcaatgtgctgctccgcccaccggctaccactaaccccacc
tcagactccaaccctaaaccctctcaagaaatcacaccccttccagaaaaaacatctagc
aacatgagtccagagattgttaacggaacgaatgacaatgatcctgactctgattccgag
ggcagcgttcacagcaaccaatcgattcccagtgagaaaaccctttctgagcggctggag
attctgaccaatcaggatctcatccagatagtgaaggtctttttggattggctgaggaca
aacaccgacatcatcctgatgtgtgctcagagttctcagagcttgtggaacagactctca
gtcctgcttaacttactacctgagggcaccaagattttggaagcagatctaggcttgaat
aaagaggtgacagaactcctaaatgagtctgagcggcccggtttggtccagacgttgctt
ttgcctgaggatctggcactccgccaccttcctgccctcagctcggcccatcgacgcttg
gacttcactagccagagaccttctcttagccctttggaggagtgtgtggtgcgcttgggc
tgcattcgcagctttggccacttcctcacaaatctccaaggcaacgtgctgcacttcaac
ccggaggcgggcatcttcaccagcatcagccaatcggagcaggagaacctcattcagcag
gccaaggcccagttccgtatggctgaagaggaagctcgtaggaaccgtcttatgagagac
atggcccagctgcgcctgcagttggaggtctctcagctggaaggaagtctgcagcagcca
aaagcccagtcctccatgtctccgtacctggtgccagacacttctgctctgtgccagcac
ctgggtccgatcagacagctggctgccagcggctgcttcatcatcatcatccctcgtaca
ataattgatggtctggacatgctaaagaaagagaatgctggagcgagagatagtatccgt
ttcctggagacggagtttcggaagggaaacagatacatccgctgtcagaaagagtcagga
agaagttttgagagggataaattaaagcgccaggacacagaagcctggcatctttataag
atggtggacagctgtcgtcagctcaccgggtctcaaaaaagcggagatgaagacacggcc
ggcatggtgaccatattaacgggacattcgctggaggagatgactgaaagatcagcttcc
atgaaggctgctgtccaggcggtggggtctgcgggcatggagctgaaaaacatcaccgag
ttttatcagcaatggaaggagatgggctga
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