| Entry |
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| Symbol |
ddx42
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| Name |
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
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| KO |
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| Organism |
manu Misgurnus anguillicaudatus (oriental weatherfish)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:manu00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129436077 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:manu03041]
129436077 (ddx42)
Enzymes [BR:manu01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129436077 (ddx42)
Spliceosome [BR:manu03041]
Complex A
U2 snRNP components
U2 snRNP specific factors
129436077 (ddx42)
Complex B
129436077 (ddx42)
Complex C
U2 SnRNP specific factors
129436077 (ddx42)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
19:26120831..26127728
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| AA seq |
895 aa
MNWNKGGPSGKRGFGFGGFSLATGKKEEPRVPQNAHSAFGSGPSGGYGKNQQLSSFYKIG
SKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRKQFQSGGGGGGGSDSEDDPLDAFM
AEVEDQAARDMKKLEEKEKEKAKGIRDDIEEEDEQEAYFRYMAENPTAGLTLEEEEEEID
YDSDGNPIAPITKKIIMPLPPIDHSEIDYPPFEKNFYIEHEEISCLTGVGVVELRQKLNL
KVSGAAPPKPATSFAHFTFDEQLMNQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGS
GKTAAFIWPMLVHIMDQKELEQGEGPIAVVVCPTRELCQQIHAECKRFGKVYGLRSVAVY
GGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQV
RSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQIVEVLQSG
QEKWGWLTRRLVEFTSAGSVLVFVTKKTNSDELATNLTQEGYSVGLLHGDMDQSERNKVI
ADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTL
LTTKDTSFAGDLVRNLEGANQSVSKDLMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYR
ERPGLGSDTSERSSGGALSNYEAYKPSTGAMGDRMSAMKQAFQAQYKNHFVAASGVPPKL
TTKSSSSSGWTSAGSLSSVPSGAPEGPDRPHLSYSPSSSSSSFLSMPPPPALSSGTKMSG
FSSAGSLSSLSDSYSSSSSKEGSRSDRGADDRGRHGDSHYRHGDRHSGGDRDRYGERDRH
SDSHRDRHGDSRNGDGSHRDREGRSDRDAGDRSGSNKESFAVPDLPKRKKSRWDN |
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| NT seq |
2688 nt +upstreamnt +downstreamnt
atgaactggaacaagggaggaccgagtggtaagcgaggcttcggattcggcggattctcc
ctcgcgactgggaagaaagaggaaccccgtgtgccccagaatgcccattctgcatttggc
tctggaccatctggtggatatggaaagaatcaacagctttcgtcattttacaaaataggg
tctaaaagagctaattttgacgaggagaatgcgtattttgaggatgatgaagaggagtct
agcagtacagatctgccatatataccagccgagaactcgccaacaaggaagcagtttcag
tctggaggaggtggaggaggaggttcagacagtgaggatgatcctcttgatgcttttatg
gctgaggtggaggaccaagcagcgagggacatgaagaaacttgaagagaaagaaaaagag
aaggccaagggtatacgggatgacatcgaagaggaagatgaacaagaagcgtattttcgt
tacatggcagagaacccaacagcagggctgacccttgaagaagaggaggaagaaatagac
tatgatagtgatggaaatccaattgctcctattaccaagaagattattatgcccctgcct
cccatagaccactctgagattgattatcctccctttgagaagaacttttatattgagcat
gaggaaatcagctgtcttactggggttggagtggtggaattgaggcagaagcttaacctg
aaggtatcgggtgcagcccctcctaaaccagccactagttttgcccacttcacttttgac
gagcagcttatgaaccagatccgtaaatcggagtacactcaacccacacccatccagtgc
cagggtgttcccattgctttgagtggcagagacatgattgggattgccaaaactggcagt
ggaaagactgcggcttttatttggccaatgctggtgcacattatggaccagaaggaattg
gaacagggagagggacccatcgctgtggttgtttgccccaccagagaactctgtcaacag
atccatgctgagtgcaagcgctttgggaaagtctatggcctacgctcagtggcagtgtat
ggaggaggcagcatgtgggagcaagccaaagccttacaggaaggagcagaaattgttgtc
tgcaccccaggtcgtctaatcgatcatgttaagaagaaggctacatcactgcagcgagtg
acctacctggtgtttgatgaagctgatcgcatgttcgacatgggttttgaataccaagtg
agatccatcgccagtcatgtcaggcctgatagacagactctgttgttcagtgcaacattt
cggaagaaaattgaaaagctggcacgggatattttagttgatccgatccgtgttgtgcaa
ggagacattggagaggctaatgaagatgttactcaaatagtggaagttctgcagtcgggg
caggagaagtggggatggctgacacgcagactggtggagttcacctccgctggttctgtg
ctggtttttgtgactaagaagaccaactctgatgagcttgctacaaacttgacacaggaa
ggttacagtgtcgggctgcttcatggtgacatggaccagagcgagagaaacaaagtcatt
gcggacttcaaaaagaagaacctacctgtattagttgctactgatgtagctgctcgagga
ttggatatcccatccatccgtacagtagtgaactacgacgtggcaagggacattgacacg
cacacacatcgaatcggcagaacgggacgtgcgggggagaaaggtgtggcttacactctg
cttaccactaaagacacttcgtttgctggtgacctggttcgaaatttagagggagccaat
cagagtgtttcaaaggacctgatggacttggcaatgcagaatccctggtttagaaaatcc
cgctttaagggtggcaaagggaagaagctaaacattggaggtggtggtctcggatacaga
gagagacctggtcttggatccgataccagtgaacgcagtagtggtggtgctctcagcaac
tatgaagcttacaaaccttccaccggagccatgggagaccgcatgtctgccatgaagcaa
gcatttcaggctcagtataaaaatcattttgtggcagcatctggtgttccacctaaactc
accacaaagtccagcagctcttctgggtggaccagtgcaggaagcctgagttctgtgccc
tcaggagcacctgaggggcctgacagaccccacctttcctactcgccttcatcatcttcc
tcctcctttttgtccatgccaccaccccctgctctcagctcgggcactaagatgagtgga
ttcagcagcgccggctctttaagctctttgtcagactcttactcaagctcttcttcaaaa
gaggggtcccgtagcgataggggtgccgatgacaggggtcgtcatggggatagtcattat
cgtcatggtgacaggcacagtggtggagaccgtgatcgttatggggaaagggaccgtcat
agtgatagccacagagaccgccatggtgacagtcgaaacggtgacggaagtcatagggac
agagagggacggtcagacagagatgcgggggataggtcagggagtaataaagaaagcttt
gctgttcctgatctcccaaaacgtaagaaaagtagatgggacaattag |
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