Misgurnus anguillicaudatus (oriental weatherfish): 129437925
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Entry
129437925 CDS
T09481
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129437925 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
manu03021
]
129437925 (supt5h)
03019 Messenger RNA biogenesis [BR:
manu03019
]
129437925 (supt5h)
Transcription machinery [BR:
manu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
129437925 (supt5h)
RNA polymerase I system
129437925 (supt5h)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
129437925 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
129437925
NCBI-ProteinID:
XP_055052302
LinkDB
All DBs
Position
3:18970536..18988000
Genome browser
AA seq
1084 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSEAEEVEENEDEEEQRSLTGSDKAAEEEGEDLDEEEYDEEEEE
DDDRPRKKPRHGGFILDEADVDDEYEDEDPWEDGAEDILEKEEAEVSNIDHVVLDEDHSG
SRRLQNLWRDSREEALGEYYMRKYAKSSGGEHFYGGSEDLSDDITQQQLLPGVKDPNLWT
VKCKIGEERATAIALMRKFIAYQCTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKAAIEG
VGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQN
TISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGDFMIF
EGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTETTGKEREHNLQ
AGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKVI
AGRFEGDTGLIVRVEENFVILFSDLTMHELKVLSRDLQLCSETASGVDAGGQHEWGELVQ
LDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIVK
VIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGG
FAPMSPRISSPMHPGGGGGGGGQQQRGGGGGMGRGRGRRDNDLIGQTVRISQGPYKGYIG
VVKDATESTARVELHSTCQTISVDRQRLSTVGAKRQGGMTSTHGRTPMYGSQTPMYGTGS
RTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNANTPSRGEDEFEFNYDD
EPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSY
QPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGG
YNPHTPGSNIDQASNDWVTTDIMVRVKDTFLDGGVINQTGVIRSVTGGMCSVFLQNTDKV
VSISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRFLG
KLEA
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatagtgaggacagtgatttctctgataaccagagtgagaggagcagtgaggct
gaagaagtggaggaaaacgaggatgaggaagaacaaaggagtttaactggcagcgacaag
gcagcagaagaggaaggagaagatttggatgaagaggaatatgatgaagaagaggaagag
gatgacgatcggcccaggaagaaacctcgacatggcggttttatcttggatgaagccgat
gttgatgacgagtatgaagatgaagatccctgggaggacggggctgaagatatcttagaa
aaagaagaagctgaagtgtccaacattgaccatgtagttttggatgaggatcactcgggt
tctcgtaggttacagaacctctggagggactcccgagaagaagctctgggggagtattat
atgagaaaatatgccaaatcctcaggaggagagcatttttatggcggctcagaggatctt
tcagatgacatcacccaacagcaattgctacctggagtcaaggatcccaatttgtggact
gttaagtgtaagatcggagaggagagagcaaccgccatcgccctcatgcggaaattcatt
gcgtatcaatgcacagacactccacttcaaatcaaatctgtggtagccccggagcatgtc
aagggttacatctatgtggaggcatacaaacaaactcatgtcaaggccgctattgaagga
gtcggaaatctacgtatgggtttctggaaccagcagatggtgcccattaaagaaatgaca
gatgtcttgaaagtggttaaggaagtgacgaatcttaaacccaagtcttgggttcgtctg
aagcgaggcctttataaagatgatattgcccaggtggactacgttgaaccgagccagaat
acgatttcgctaaaaatgattcctcgtatcgatctggaccgcatcaaagcaaggatgagc
atgaaagactggtttgcaaagagaaagaagtttaaaagaccagctcagaggcttttcgat
gctgaaaagatcaggtctctcggtggtgaggtcagccacgatggtgacttcatgatattc
gaaggcaaccgttatagccgaaaagggttcctgttcaaaagctttgccatgtcagccgtg
atcacagatggtgtcaaacccactctttcagagctggagaagtttgaggatcagcccgag
ggtattgaccttgaagtagtcacagagaccacaggcaaggagcgtgagcacaatctccag
gcaggtgataatgtggaggtgtgtgagggagagttgatcaaccttcagggcaaaatcctg
agcgtggatggcaacaagattaccatcatgcccaagcatgaggatcttaaggatccactt
gaattcccagcacatgaactgaggaagtactttcgaatgggcgaccatgtgaaagtaatt
gcgggtcgttttgaaggcgacacgggtttgatagtccgtgtggaggagaactttgttatt
ctgttttccgacctcaccatgcatgaattgaaagttttgtccagggatctgcagctgtgc
tctgagacggcctcaggtgtggatgcaggcgggcagcatgagtggggagagctggtgcag
ttagacccccaaaccgtcggtgtcattgtcagactagagcgagagaccttccaggttctg
aacatgcatgggaaggttttaacagtccgccatcaggccgtaaacagacgaaaggacaac
cgtttcgccgtagctctcgactcggagcaaaacaacatccacgtgaaggatattgtcaaa
gtcattgatggaccacactcgggccgtgaaggtgaaatccgtcatctcttccgaggcttc
gcttttcttcactgcaagaagcttgttgagaatggaggcatgtttgtttgtaagacgcgc
caccttgttcttgcagggggctcgaagcccagggatgtgaccaatttcacagttgggggg
tttgctcctatgagcccacggatcagcagtccaatgcatccaggaggaggtggtggtggt
ggtggtcagcagcaaaggggtggcggtggaggcatggggcggggacgtggaaggcgagac
aatgatttgattggtcagactgtccggatatcccagggaccttacaaaggctacatcgga
gtggtgaaagatgccacagaatcgacagctagggtagagctccattcgacatgccagacc
atctcagtggaccgtcagcgtctctcgaccgtgggtgccaagcgacagggaggaatgacg
tctacacacggacgtaccccaatgtatggctctcagacacctatgtatggaactggctca
cgtactccaatgtatggtagccagacgcccctccatgatggaagccgtacacctcattat
ggctcccagactcctttgcatgatggaagcaggacaccaggtcaaagcggtgcatgggac
cccagcaatgcaaacacaccatcacgaggcgaagatgaattcgagtttaattatgacgat
gaaccctcgccgtctcctcagggttatggcggaacgcccaacccgcagacccctggttat
ccagaagtgccctccccacaggtcaacccccagtacaaccctcagactcctgggacgcct
gccatgtacaacaccgaccagtattccccatacgcagcaccatctccgcagggatcttac
cagcccagtcccagcccacagagttaccatcaagtagccccaagccccgtgggataccaa
aatacgcactctcccgccagttaccaccccaccccatcacctatggcctaccaggccagt
ccaagccccagcccagttggttacagtccaatgactcctggagctccatctccaggaggc
tacaaccctcacacccctggatctaacatcgatcaggcctccaatgactgggtcaccaca
gacatcatggtgcgggtaaaagacactttcttggacggcggcgtcatcaatcagaccggt
gtcatccgcagtgttacaggagggatgtgctccgtttttcttcaaaacacagacaaggtg
gttagcatttcaagcgaacatctggaacccgtcactccaaccaaaaacaacaaggtaaag
gtgattttaggagaagaccgggaggccacaggggtgctgctcagtatcgatggagaagat
ggcattgttcgaatggagctggatgagcaactgaagattctcaatctccgcttccttggg
aaattggaagcgtaa
DBGET
integrated database retrieval system
