Misgurnus anguillicaudatus (oriental weatherfish): 129438090
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Entry
129438090 CDS
T09481
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03030
DNA replication
manu03420
Nucleotide excision repair
manu03430
Mismatch repair
manu03440
Homologous recombination
manu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129438090 (rpa1)
03420 Nucleotide excision repair
129438090 (rpa1)
03430 Mismatch repair
129438090 (rpa1)
03440 Homologous recombination
129438090 (rpa1)
03460 Fanconi anemia pathway
129438090 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
manu03000
]
129438090 (rpa1)
03032 DNA replication proteins [BR:
manu03032
]
129438090 (rpa1)
03400 DNA repair and recombination proteins [BR:
manu03400
]
129438090 (rpa1)
Transcription factors [BR:
manu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
129438090 (rpa1)
DNA replication proteins [BR:
manu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
129438090 (rpa1)
DNA repair and recombination proteins [BR:
manu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
129438090 (rpa1)
MMR (mismatch excision repair)
129438090 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
129438090 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
Motif
Other DBs
NCBI-GeneID:
129438090
NCBI-ProteinID:
XP_055052609
LinkDB
All DBs
Position
24:complement(22659099..22687563)
Genome browser
AA seq
600 aa
AA seq
DB search
MTVVLSEGAIESLTKGGDVSSPVLQVLNIRKLDGGNGLSRFRLMMSDGLHTMSSFMLSTQ
LNPMAEQNQLTPNCVCLIKRHVTNVLKDGRRVVVILDMEVVKSADQMEGKLGDPTPYVEG
QSKPPQTAAPAVRPLQPQNGSDGSMHRGPSHSFGKKPMAAPNTPGGSSKVVPIASLNPYH
SKWTIRARVTNKSSIRTWSNSRGDGKLFSMELVDESGEIRATGFNQEVDKFYSLIEQGKV
FYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSTDVPMLQCDFISIADLEAREKD
SIVDVIGVCKSVEDVTRITTKNSREVSKRNIQLMDMSGKVIQLTMWGNDAETFDGTGQPI
LAIKGARLSDFGGRSLSTQFSSTVMINPEIPEAYKLRGWYDKEGHAMDGQSMTEMRGPGG
GGNTNWKTLTEVKNEQLGHGDKADYFSCVATIVYMKKENCLYQACPSKDCNKKVIDQQNG
MFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVMCFQDSAETILGQNSAYLGQLKDSNEA
AFDEVFQHANFNTFLFRNRVKLETYNDESRIKVTVVEAKPVDHREYSKRLIINIRKAATQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgactgtggtattgtccgagggagcaatagagtccctgactaaaggaggtgacgtcagc
agccctgttcttcaagtgttgaacattcgtaagcttgatggaggaaatggcctgtcccgc
ttcagacttatgatgagtgatgggcttcacacgatgtcctcattcatgctctccacacag
ttgaatcccatggctgaacagaaccagttgactcccaactgtgtctgcttgatcaaacgt
cacgtcactaatgttctcaaggacgggcggcgtgtggtggttattctggacatggaggtg
gtcaagtcagctgaccaaatggaaggaaaattgggagacccaactccttatgtagagggt
caatcaaaacctccacaaactgcagcgccagctgtacggccattgcagcctcagaatgga
agtgatggttcaatgcatagaggaccttctcacagctttggcaagaagcccatggctgcc
cctaacactccaggtggcagctccaaagtagtgcccattgccagcctcaacccgtaccat
tcaaagtggactattagagctcgtgtcaccaacaaaagcagcatccgcacatggagcaac
tccaggggggatggcaagctcttctctatggagcttgttgatgagagcggagagataaga
gcaactggatttaatcaggaagtggataaattttactccctcattgagcagggaaaagtc
ttctacatttccaaaggcaccctgaagatcgccaataagcagttctcatcattgaagaat
gactatgagatgaccctcaatggtgagacgagcatcattccttgcgaagacagcactgat
gtccccatgctgcagtgtgatttcatctccattgctgacctggaggcccgggagaaagac
agcatcgtagatgtgattggggtgtgtaaatccgtggaggatgtaacgcgaatcacgacc
aagaacagtcgtgaggtttccaagaggaacatccagctgatggacatgagtggaaaagtc
attcagttaaccatgtggggaaatgatgcagagacgtttgatggcactgggcagcccatc
ctggccatcaaaggggcaagattgtctgacttcggtggacgttcactctccactcaattc
agcagcacagttatgatcaaccctgagattcccgaggcatacaaactgcgaggctggtat
gataaggagggacatgctatggatggtcagtctatgactgagatgagaggaccaggcggc
ggtggaaacacaaactggaagaccctgacagaagtcaagaatgaacagttgggtcacgga
gacaaggctgattatttctcctgcgtcgccactatagtctacatgaaaaaagagaactgc
ttgtatcaggcctgccccagtaaagactgcaacaagaaagtgattgaccagcagaatggg
atgtttcgctgtgagaaatgtgacaaagaatttcctgacttcaaatatcgcctcatgctc
tcggccaacattgctgattttggagacaaccaatgggtgatgtgttttcaagacagcgcc
gaaaccattctaggccaaaactcggcttatctcggccaactcaaggactctaatgaggca
gcgtttgatgaggttttccagcatgcaaactttaatacctttctcttccggaacagagta
aagctggagacctacaatgatgaatctcgcattaaagtgacagtggtggaggcaaagcca
gtggaccacagagaatacagcaagcggttgatcatcaacataaggaaagcggccacacag
taa
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