Misgurnus anguillicaudatus (oriental weatherfish): 129440887
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Entry
129440887 CDS
T09481
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129440887 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
manu03041
]
129440887 (prpf4)
Spliceosome [BR:
manu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
129440887 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
PRP4
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_like
WD_LRWD1
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
129440887
NCBI-ProteinID:
XP_055056438
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All DBs
Position
22:complement(4070396..4084193)
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AA seq
507 aa
AA seq
DB search
MSDEDEAPVVKKSRIFYGSLEDKERERLSREGTTSTAKDAVKAGIDAGNINISSGEFMEM
EDRISDRQAEVLAEFERRKRARQITVSTDDVEVKACLRSLGEPITLFGEGPAERRERLRN
FLSVVGPDALKKSKKEEDKGKRSQDEYQQTWYHEGPSSLKEARLWLAKYSLPRAVQRLDD
ARALKEVPESIRTVRQQELHKNLRNLNNFCSQIGDDRPISYCQFSPNSKMLVTASWSGLC
KLWKVPDCTLVRTLRGHNTNVGAISFHPQATLTLEESDVNMASCAADGTVKLWSLDSDEP
VADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEAQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDAFARVWDLRTGRCVMFLEGHLKEIYSINFSPNGYNVATGSGDNTCKVWD
LRQRRCIYTIPAHQNLVSSVKFQPTDGHYLLSGAYDNTAKVWTHPGWSPLKTLAGHEGKV
MGLDISPDGQLIATCSYDRTFKLWMSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaagacgaagccccagttgtgaaaaagtccaggatcttctatggaagcctc
gaagataaagagagagagcgtcttagccgtgaaggaacaacatccactgctaaagatgcc
gttaaagctggcattgatgctggaaatattaatatctccagcggcgagttcatggaaatg
gaggaccgcataagtgatcgacaggctgaagtattggcagagtttgagcgtagaaagcga
gccagacagatcacggtctccactgatgatgtggaggtcaaggcctgtctgcgatctctt
ggcgagccaatcacgctgtttggggaggggcctgcggagagacgggagagattgagaaat
tttctttcggtggttggtcctgacgccttgaaaaaatcaaagaaagaagaggataaagga
aaacgcagtcaagatgaatatcagcagacgtggtaccatgaaggcccttcatctttgaag
gaggcacgtctatggttggccaagtattcactgcccagagcagtgcagaggttagatgat
gcgagagcccttaaagaagttccagaatctatacgaacagttcgacaacaagagcttcac
aagaaccttaggaatctaaataacttctgcagccaaattggcgatgaccgtccaatatcc
tactgccagtttagccccaactctaagatgttggtgacggcatcttggagtggtttgtgt
aaattgtggaaagtcccagattgtacactcgttcgcactttaaggggtcacaataccaac
gtaggagccattagctttcatcctcaagccacactgacgctggaggagtcagatgtcaat
atggcctcctgtgctgcggacggcactgttaaactctggagtttagacagtgatgagcct
gtagcagacatcgaagggcactccatgagggtggcacgagtggcctggcacccatccgga
cggtttttgggcacaacttgttatgataactcatggcggctgtgggatcttgaagctcaa
gaagaaattctgcatcaggagggtcacagtaaaggagtccacgatcttcacttccaccca
gacggctcgctcgcaggaactggtggtctggacgcgttcgctcgtgtctgggacctgcgg
actggccgttgcgtgatgttcctggagggtcatctcaaagagatatacagcatcaacttc
tcaccaaatggctacaatgtggcaacaggaagtggagataacacctgtaaagtgtgggac
cttcggcagaggaggtgtatatacacgattcccgcccatcaaaaccttgtgtcgtccgtc
aagttccagcctacggatgggcattacttgctgtctggtgcgtatgacaacacagccaag
gtgtggacacatccaggctggtctcctctgaagactctagcggggcatgagggcaaggtt
atggggcttgacatttcacccgatggacagcttattgcgacctgttcctacgacagaacc
ttcaaactatggatgtcagaataa
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