Misgurnus anguillicaudatus (oriental weatherfish): 129440899
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Entry
129440899 CDS
T09481
Symbol
sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03015
mRNA surveillance pathway
manu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129440899 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
129440899 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
manu03021
]
129440899 (sympk)
03019 Messenger RNA biogenesis [BR:
manu03019
]
129440899 (sympk)
Transcription machinery [BR:
manu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129440899 (sympk)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
129440899 (sympk)
U7-dependent histone pre-mRNA processing factors
129440899 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Adaptin_N
Cohesin_HEAT
Cnd1
Motif
Other DBs
NCBI-GeneID:
129440899
NCBI-ProteinID:
XP_055056454
LinkDB
All DBs
Position
4:43963122..43987097
Genome browser
AA seq
1224 aa
AA seq
DB search
MASDVGEQSHGGMDEDKALDMTTSEKVVELLNQASLISTEEKLVILKQVQELIINKDPSL
LDNFLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLMRDESVNVVKKA
ILTLTHLYKVALQWLVRTKTVSDMEEACWDMVTRMKDDVLALLDSDNDGVRTHAIKFTES
LIITLSPRTPDSDTPKKHEGDISLDKIPKDHAYIRYDTLSEEGKSALDQLLKFMVHPAIS
SINLTTALGSLATLARQRPMFMSEVVQAYEMLHANLPPTLAKSQVSSVRKNLKLHLVSVL
KHPSSVDFHGQISTLLQDLGMSQNEITRCTPAPQKRRHHEPYVEGKRIKMETALVEDDED
KEEQAPVITPKPSSSVGTQSALDLTAEFLFPLLSPENVANLVLISMVYLPEVMPASFQAT
YTPVESAGTEAQIKHLARLMATQMTAAGLGPGLEMCKARDEEVKGEDEGSSEISSKDPLI
VRKFSLGQAISVVGAYKSPVTEETPQIKKVPEPILPTTQPKAPGTSGRKKVFKLADVVQP
FSEAQIEKLIDMSVNRILQSERAIAQSGMSHVRMKLLARLVTQFEGGMKNDLLQFILDDM
RGRCELAFSLLYHEYNEYLNQQPSGSLDSYEQCLFTLLSGLQEKPEQKDGLFTKLVLEAP
VITDSALEVIQRYCEDESRVYLGMSTLKDLILKRPSRQYQYLNVLLNLSCHEKEKVRTTA
LSFIKRMYEKKHLKDCIEKFGLTYMQFLVHPNPPSLLFGAAEDTEVAGSWTEETVRQCLY
LYLSLLPLNHCLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMSSPDLLLLVENCPKGA
ETLITRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKHEVIQALPKLIK
LNPIVVKEVFNRLLGTQHSEGSSSMSPLTPAELLIALHNIDSSKCDMKSIIKATNLCFGE
KNVYTSEVLAVVMQQLMEQTPLPILLMRTVIQSLTMYPRLAGFVMNILARLILKQVWKYP
KVWEGFVKCCQRTKPQSYNVLLQLPPAQLASVFERCPEMRDPLLQHVHSFTPHQQAHIPS
SIIAILEANIRKLEPEPEPQLPEVIEERQIQIPKHISAPVPQAEPPAPAPIAFTEPVPEP
IPSRREEVEEPMEQAEAAHAFPVVTSEPALQQMEVSEDATQSSTVTEKADEPMEESTAGD
VADQTKVVPEDADTEPEPETSNVD
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagatgtgggagaacagtcacatggtggcatggatgaagataaagctcttgac
atgaccaccagtgaaaaggtagtggaattactgaaccaagcttccctcatctcaacagaa
gaaaaacttgtcattctcaaacaggtgcaggaattgattatcaacaaagacccttcatta
cttgataactttctggatgaaatcattgcatttcagacagacaagtcgattgaagtgcga
aagtttgttatcggctttattgaggaggcctgtaaaagggataatgagcttcttctgcga
ctgattgccaatttgaatatgctaatgagagacgagagtgtgaatgtggtgaaaaaggcc
attctgacccttacacacctatataaagtggctttacagtggctggtgcgtaccaagacc
gtctcggacatggaggaagcatgctgggatatggtaactcggatgaaagacgatgtcctg
gcattgctcgattccgacaacgatggggtccgcactcacgccatcaaattcacagagtcc
ctcattatcactctgtcaccacggacacctgactccgacactcccaagaagcacgagggg
gacatcagcctggacaaaattcccaaagatcacgcatatatacgttatgacaccttaagc
gaggagggtaagtctgctctggatcagctgttgaagttcatggtccatcccgccatctcc
agcattaatctgaccactgcacttggatcactggccacgttggccagacagcggcccatg
ttcatgtctgaggtggtgcaggcctatgaaatgctacatgctaacctgccaccaactctg
gccaaatctcaggtcagtagcgtgcgtaagaacctgaagctgcacctggtctcggtgctg
aagcaccccagcagtgtggacttccacggccagatttccactctgctgcaggatctcggc
atgtctcagaacgagatcacccgctgcacccctgctccacagaaaagacgccaccatgag
ccctatgtagagggcaagaggatcaagatggagactgctttagtggaagatgatgaagat
aaggaggaacaagcaccggtcatcacaccaaaaccctcgtcctccgttggcacccaatca
gcgctcgatctcactgccgagttcctgtttcccctcctttccccagagaacgtggctaac
ctggtactcattagtatggtctacctgcctgaagtgatgccagcctctttccaggccacg
tacacgcctgtagagtctgcgggtactgaagctcaaattaaacatttagccaggttgatg
gctacacagatgactgcggctggtttgggaccaggtttggaaatgtgtaaggctcgggat
gaggaggtgaagggggaggacgaaggatcgagtgagatcagctccaaagaccctctcatc
gttcgtaaattctccctcggtcaggccatctcagtggtgggggcctacaagagccctgtt
actgaggagacacctcagatcaagaaagttcctgaacctatacttcccacaacacaacca
aaagctcctggcaccagtggcagaaagaaggtctttaaattggcagacgtcgtgcagccg
ttctcagaggctcagattgagaagctaatcgacatgtccgtcaatcgaatcctccaatcg
gaaagagccattgcacagagcggaatgtctcatgttcgaatgaagctgcttgctcggttg
gtgacccaatttgaaggagggatgaaaaatgacttgttacagtttatcctggatgacatg
cggggtagatgtgaactggccttttctctgctgtaccatgagtacaatgaatacctaaat
cagcagccctccggctctctggacagctacgagcagtgtctgtttacacttctgtccggc
ctgcaggagaaacctgagcagaaagacgggcttttcaccaagcttgttctggaggctcca
gtcatcacagactcggccctggaggtgattcaacgctactgcgaagatgagtcacgtgta
tacctgggcatgtccaccttaaaggatctcattctgaaacgcccgtctaggcagtaccag
tacctcaatgttcttctgaacctcagctgtcacgaaaaagaaaaggtgcgaacaaccgct
cttagcttcatcaagcgcatgtacgagaagaaacacctgaaggactgtattgagaagttt
ggtcttacgtacatgcagttcctggtccacccaaacccaccctctcttctgtttggagca
gcggaggacacagaggtggcgggttcttggacggaggaaaccgtgcggcagtgtctctat
ctgtatctctccctgttgcccctcaaccattgtctggttcatgagctggcagccgtctac
accgaggccatcgctgacatcaaacgtagtgtgctgcgagtcattgaacagcctataaga
ggcatggggatgagttctcctgacctgctgctcctggttgaaaactgtcctaaaggagca
gagacactgatcactcgctgtctacacatactcactgataaagtgcctccatctcctgaa
ttggtggagagggtgcgagatctctatcataaacgagtccctgatgttcgttttctcatt
ccggtcatcaatggcctggagaagcatgaagtgatccaggctttacccaaactcatcaag
cttaatcccatcgtagtcaaggaggtgttcaaccgacttctgggcactcaacacagtgaa
ggcagttcctccatgtctccgctcactcctgctgaactcctcatcgccttgcacaacatt
gactcctccaagtgtgacatgaagtcaatcatcaaagccaccaacctgtgctttggggag
aagaatgtgtacacatcagaagttctggcggtggtgatgcagcagttaatggagcagacg
cctcttcccatactgctgatgcgtacggtcattcagtccctcaccatgtaccctcgcctg
gccggtttcgtcatgaacatcctggcccggctcatccttaagcaagtgtggaagtatccc
aaggtgtgggagggctttgttaaatgctgccagcgtacaaaaccccaatcttacaacgtg
ctcctccaactacctcctgcacaactggctagtgtgtttgagcgttgtccggagatgaga
gacccgctcctacagcatgtgcactcctttacgcctcaccaacaagcccacattccatcc
tctataattgctattctggaggccaacatcagaaagctggagccagaaccagaaccgcaa
cttccagaagtaatagaagagagacagattcaaataccaaaacacatttcagcaccagta
ccacaagcagaacctccagccccggcacccatagcatttacagaaccagtgccggaaccg
atcccatccagaagggaagaagtcgaagaacccatggagcaggcagaggcagcccatgct
tttcctgtggttacatctgaaccagcattgcagcagatggaggtatctgaagatgcaacg
cagtccagcactgtcacagagaaggcggatgaacccatggaagagtcgacggctggtgat
gtagctgaccaaacaaaagtcgtgcccgaggacgctgacacagaacctgaacccgaaaca
agcaatgtggattaa
DBGET
integrated database retrieval system
