Misgurnus anguillicaudatus (oriental weatherfish): 129440922
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Entry
129440922 CDS
T09481
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
129440922 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
manu03400
]
129440922 (lig3)
Enzymes [BR:
manu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129440922 (lig3)
DNA repair and recombination proteins [BR:
manu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
129440922 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Itf52_C
Motif
Other DBs
NCBI-GeneID:
129440922
NCBI-ProteinID:
XP_055056491
LinkDB
All DBs
Position
4:complement(44828339..44852628)
Genome browser
AA seq
1013 aa
AA seq
DB search
MYFYCFCKAIRTFSKSSVPGLCRATLLRAKQAPPYLHSSRIVIFSWGFASSPSAITFCVP
QIRQLSLSSSSHFQVFWSNNFQSKQAEMAEQRFCVEYAKRGTAGCKKCKDKIMKGLVRIG
KIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITELEGWEELQDEDKELINKH
VSELAAKTNASPKKKVQAKLSTSGQLAGPKADPTVNAPRKFSGFTATKAGSSSSSPGPSP
AKPSQGSALSAKLCDLNHKDSLLREFRKLCALVADKSGYNAKTEIIRDFLTKGSGGDKFR
GDLYLTVKLLLPGVIKNVYNLNDKQIVKLFSRILNCSQDEMVQDLEQGDVSETVRMFFEN
SKSFPPATKSLLTIQDVDASLNRLAQLTKEDEQQAELQDIAKKCTGNDLKCYIRLVKHDL
KINSGAKHVLDAVDPNAYDAFKASRNLGDVIDRVLKNQQDASNGTGPRKLLSVEASLMTP
VQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKSGDHFSYFSRSLKPVLPHKVAH
FKDFIPQAFPGGHSMILDAEVLLIDTRTSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYF
NGVSLMDKPLCERRKLLHDNMVEVPNRILFSEMKHVTRGRDLAEMITRVIREGLEGLVLK
DVKGQYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPES
KKWCTVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLKIVKNYYPDFIIRDPQKAP
VWEITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELYRISKENCDFEV
TAGPSETGQNDKSSSGGDSGSSSPSTSHGASTANKTKNGHTPKAKLVKSEPPSPAVKRKL
PTEKQVAKKIKTEPVHSNGQSKLNTSIQTSDTKNEKTLLDIFTGVKLYLPESVQDFEKLR
RYFIAYDGDLVPEYDSGSATHTLAQPEEDSQSQKVTSNWIWECIRKRRVVPPC
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgtacttctattgcttttgcaaagcaataaggacattttccaaatcatctgtgccaggt
ctctgtagggcaactttactgagagcaaaacaagctccaccatatctccattcctctagg
attgttatatttagttggggctttgcatctagccccagtgccatcactttctgcgtgcca
caaatccgccagttaagtctcagctccagttctcattttcaagtcttctggtcaaataat
tttcaaagtaagcaagcagagatggcagagcaaagattctgcgtagaatatgccaaacgc
ggcaccgcaggctgcaagaaatgcaaagacaaaattatgaagggactggtccgcattggc
aagatagtgcccaacccgttcagcgagtcagcgggggaaatgaaggagtggtaccatgtg
aaatgcatctttgagaagctcgagagagctcgtgcaactacaaagaaaatagaagacatc
acagagctggaaggatgggaggagcttcaggatgaggataaagagctgatcaataaacac
gtttcagaattggcggccaaaaccaacgcaagtccgaagaagaaagtccaagccaagtta
agcaccagtgggcagctggcaggacctaaagctgacccaactgtcaatgcccctcgcaag
ttttctggctttacggctaccaaggctggttcctcatcctccagtcctggaccatctcca
gcgaaaccctctcagggtagtgctttgtcagctaagctatgtgacctcaatcataaagac
tccttattgcgagagtttcgtaaactgtgtgccttggtggcagataaatccggctacaat
gcaaagactgagattatcagggacttcttgacgaaaggctctggtggagataagtttaga
ggagacctgtatctgacagtgaagcttcttctcccaggagttattaagaatgtctacaac
ctgaatgacaagcaaattgtcaagcttttcagccgcatattgaattgcagtcaggatgaa
atggtgcaagatctggaacagggagatgtttcagagacggtgcgtatgtttttcgagaac
agcaaatctttccctccagcgaccaaaagccttctgaccatccaggacgtggatgcctca
cttaatcgtttggcacaactcaccaaggaggatgagcagcaggctgaactacaggatatt
gccaaaaaatgcacagggaacgacctaaagtgttacatccgtctggtcaaacatgatctg
aaaataaactctggggccaagcatgttctggatgctgtcgaccctaacgcctacgatgcc
ttcaaagcttctcgtaaccttggtgacgtaattgacagggtactgaagaaccagcaggat
gcgtccaacgggacagggcccagaaaactcttaagtgtggaggcttctctgatgacacct
gtacaaccaatgctggcagaggcgtgcaagtccatcgagtatgccatgaagaagtgtcct
aatggaatgtactctgaaatcaagtatgatggcgagcgcgtgcaggtccataagagcgga
gatcacttcagttacttcagtcgtagtcttaaaccagtcctcccacataaggttgctcat
tttaaagacttcataccacaagcgtttcctggtggtcatagcatgattcttgatgctgaa
gttctgcttatcgacacaaggactagtaaacctttgccttttgggactcttggggtacac
aagaaagcagccttccaggatgctcaagtgggtctgtttgtgtttgactgcatttatttt
aatggcgtcagtctcatggacaagcctctctgtgagaggagaaagttactccatgacaat
atggtggaagttccaaacaggattctgttctcagaaatgaagcatgtcacgcgaggtaga
gatctggcagaaatgatcactcgtgtcatcagagagggactggagggattggtactgaaa
gatgtcaagggccaatatgagccagggaagcgtcactggttaaaagtgaagaaagattat
cttaacgaaggagcaatggcagacactgctgatcttgtggtgcttggagctttctatggc
aaaggctcaaatggtggaattatgtccagttttcttatgggctgctatgaccccgaatcc
aagaagtggtgcactgtgaccaagtgttctggaggctatgacgatgcgaccttagccaga
ctgcaaaaggagttagatgttatcaaaatcggcaaagatccaagcaagataccagggtgg
ttgaagatcgtcaaaaactattatccggacttcattatccgagatccgcaaaaagcacca
gtatgggaaattacaggagcggagttttcgaaatcggaaatgcacacagcggacggcata
tccatccgtttcccacgctgcactcggatgcgagatgacaaagattggaaaaccgccacc
aaccttcagcagctcaaggaactgtatcgtatctcgaaagagaactgtgattttgaggtg
acggctggtccatctgaaactggccagaatgacaagagctcctcgggaggtgacagcgga
agcagctcaccctcaacatctcatggagcttccactgctaacaaaaccaaaaatggtcat
actcccaaagccaagttagtgaaatctgaaccaccctcgcctgcagttaaaagaaaactg
cccaccgaaaaacaagttgcaaagaagattaaaaccgaacccgtccacagcaatggacag
agcaaactaaacacatcgattcaaacatccgacacaaagaatgaaaagactctactggac
attttcacaggcgtgaagctctacctcccagagtccgtgcaggactttgagaaacttcgg
cgttactttatagcgtacgatggagatctggtgccagagtacgactccggttcggccaca
cacacgctggcacaaccagaggaggacagtcagagccagaaggtcacctccaactggatc
tgggaatgtatccgcaagaggcgggtggttccaccctgctga
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