| Entry |
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| Symbol |
smg7
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| Name |
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
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| KO |
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| Organism |
manu Misgurnus anguillicaudatus (oriental weatherfish)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:manu00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129441985 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:manu03019]
129441985 (smg7)
Messenger RNA biogenesis [BR:manu03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129441985 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
129441985 (smg7)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
2:complement(18642030..18667386)
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| AA seq |
1173 aa
MNLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSSTSAIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
TKWSVSDFIKAFIKFHGHVYLCKSLDKLNTLREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDFGNEADEQSYSSDEQISWIQLLGLFMSFLGGMLSRALLNKNREEIMGECPL
PAIKVSLDWLRLRPNVLSESAVDKRQYIWPWLVSILNSFQPKEEDVSNASVIPLPEEFEL
QGFLALRPALRMLDFSKGHQGVVVGKESLLIHARHQRLVSLGKWVADNEPRLIQCRINDA
LVLFITDIPEMVVEEPQEKDTPVLQESSNGEQTPNDSTQGLKSVLSAGKNQNSGLDGSER
PVVTFKENIKPREQSREQNRNQHQRDAGKERAGFNKGNGTQGKNEQKKEGKRKSEVKKNS
HEKSTDAGKQVKTQTEMRKTPVSEARKTPVTQTPATSSQFIPIHHPGAFPPLPSRPGFAP
PAYVIPPPVAFSVSPGFTFPTGVSVPAPFLQTASHPQSANQVQPGKPSHIPYSQQRPSGP
GALNQGPPQSQQTQPPPPHQSQQALQQSVQLQVQQQQQQQQQSPTKQSSQLGKSPPHHHS
MQQPYMQVPEQAGQMWNQHQNQPSMQKMPMQMPVKQPFFMPTQEPMNLFEHPMSMQPPQP
SMDKKMKFPEVKVQDFYWEPSYHIGGEGRGGMGDRMGKRQPGVFCPDQESMPRGPQYEDN
KSSPLLPPDLLKTLADFEEEEELLFTKPHDFYQALAGPLNSAPGRNIFLPNQSRLDSGAD
VIGQSSLLPRFTIQESSYQNNSIFSEAYGKNMAPTSKPDAPMMHQEPSLYSLFEGTPWSP
SLPASSDHSTPASQSPHSSNPSSLPSSPPTHSHSSLPFSNFGPIGTPDSRDRRVTDRWKT
DKTGVSGFGLDYLPSASSTSSVPETNSWHQGAPTNSWAAQDMQMEDSSTVLLDSFKSIWS
SSMMQPGPSALEQLLMQQKQKQQRGHGNMNPPH |
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| NT seq |
3522 nt +upstreamnt +downstreamnt
atgaacctctgcgcccaatacttacggcaggcagaggccctgaaggctgacatgacagat
tcaaagcttggtgcggcggaggtctggacgtcacgacaggctcttcaggacttgtaccag
aagatgctggttacggacctggagtacgccctggacaaaaaagtggaacaagatctctgg
aaccatgcttttaagaatcaaataacaacactacagagtcaagctaaaaacagggccaac
ccaaatcgaagtgaagtgcaggccaatctctctctgtttcttgaggcagctagtggattc
tatacacaactgttgcaggagctgtgcacggtgtttaatgtggacctgccttgccgtgtg
aagtcatcacagcttggcatcatcagcaataagcaaagcagcaccagcgccatagtgaag
ccccagcccagctcctgttcctacatctgccaacactgtctggtccatcttggagatatt
gcacgataccgcaaccagaccagtcaggctgagtcgtactacagacatgcagctcaactt
gttccctctaatggacaaccttacaatcaactggccatactggcttcctccaaaggagat
cacctcacaacaatcttttactactgcaggagcattgctgtcaaattcccctttcctgct
gcatccacaaacctgcagaaagctctttctaaggcgcttgagagccgggatgaggtaaaa
acaaaatggagcgtgtctgattttatcaaagctttcatcaagttccatggccacgtttat
ctgtgcaaaagcctggacaagctcaacaccctgagagagaagctggaggaacagttccag
agactgattctccagaaagccttcagctcccagcagctggtccacatcacggtgataaac
ctctttgaactgcaccatctccgggacttcgggaatgaggccgatgagcagagctacagc
tcggatgagcagatcagctggatccagctccttggcctcttcatgtctttccttggaggg
atgctaagccgggctttacttaataagaaccgagaggagatcatgggggagtgcccgctt
cctgccatcaaagtgtcattggattggttgaggcttcgacccaacgtattgagcgaaagt
gccgtagacaagcgacagtacatctggccgtggctggtgtccattctaaacagctttcag
cccaaggaggaggatgtgtcgaacgcatcagtaattcctctgcctgaagagtttgagctg
caaggctttctggcccttcgtcctgctttacggatgctagacttctctaaaggacaccag
ggtgtcgttgttggcaaggagagcctgttgattcatgctcgacaccagagactcgtcagc
ctgggcaagtgggtggctgacaacgagccacggttgatccagtgtcgcatcaatgacgcc
ctcgtgctcttcatcactgatatccccgagatggtggtggaggagccacaggagaaagac
acacctgtactccaggagtcatctaacggagagcagacacccaacgacagcacccaaggc
ctaaaatctgtcctgtcagccgggaagaaccagaacagcggcctggatggcagcgaaaga
cccgtggtcacatttaaagagaacatcaaacccagagagcagagcagagagcaaaacagg
aaccaacatcagagagatgcaggcaaggagcgagctggctttaataaaggaaatggaaca
caagggaagaacgaacagaagaaagagggcaagaggaagagtgaggtgaagaagaacagt
cacgagaaatcaacagatgctgggaaacaggtgaagactcagactgagatgaggaagact
ccagtgtctgaagcaaggaagactccagtcacacagactccagccacatcttcccagttt
attcccattcaccacccaggagctttcccccctttgccaagcagaccaggttttgctcca
cctgcttatgtgattcctcctcctgtggcattctccgtgagcccaggcttcaccttcccc
acaggcgtctctgtgcccgcccccttcctccaaaccgcctcccatcctcagtctgccaat
caggtgcagcctgggaaaccttcacacattccctacagccagcagaggccttcaggccca
ggagccctaaaccagggtcctcctcaatctcagcagacgcaacctcctcctccgcatcaa
tcccagcaggccttgcaacagtctgttcagctacaagtacaacagcagcagcaacaacaa
cagcagtcgcccaccaagcagagctctcagctcggcaagagcccgccacatcatcacagc
atgcagcagccttacatgcaggtgcctgaacaggctggtcaaatgtggaaccagcatcaa
aatcagcccagcatgcagaaaatgcccatgcagatgccagtcaaacagcctttcttcatg
cccacccaggagcccatgaacctcttcgaacatcccatgagcatgcagcctcctcaacct
agcatggacaagaagatgaagtttccagaggtcaaagtgcaggatttctactgggagcct
tcgtaccacattggaggagagggcaggggcggaatgggagacaggatgggcaaacgtcag
cctggagtcttctgtcctgaccaggagagcatgcccagaggccctcaatatgaagacaac
aagagctcccctcttctgcccccagacctgttaaaaactctggcggactttgaggaggag
gaggagcttctctttactaaacctcatgatttctaccaggccttggctggtcctcttaac
tctgctccaggaagaaacatctttttgccaaatcagtcaagactggacagtggagctgat
gtgatcggtcagtcctctcttctgcccagatttaccattcaggaaagctcataccagaac
aacagcattttcagtgaggcctatggtaaaaacatggcacctacatctaagccggatgct
cccatgatgcaccaggagccctcgctttactccctctttgaaggaactccatggtcccct
tcacttcctgctagttcagatcactcaacaccagccagtcagtcccctcactcttccaac
ccaagcagtctgccttcatcccctcccacccatagccacagctccctgcccttttccaac
tttggccccatcgggacccccgacagcagagaccgcagagtaacggaccgctggaaaact
gacaagaccggtgtgagtggctttgggttggactacctgccctctgcttcatccacttct
tctgtgccagaaaccaacagctggcaccagggggcgccaaccaacagctgggcagcccag
gacatgcaaatggaggattcctctactgtcctccttgacagttttaagtcaatctggtcg
agctccatgatgcagcccggtccgtccgcgttggagcagctcctgatgcagcagaaacag
aagcagcagcgcggccacggcaacatgaacccgccacactga |
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