Misgurnus anguillicaudatus (oriental weatherfish): 129442648
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Entry
129442648 CDS
T09481
Symbol
rc3h1b
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
manu03000
]
129442648 (rc3h1b)
04121 Ubiquitin system [BR:
manu04121
]
129442648 (rc3h1b)
Transcription factors [BR:
manu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
129442648 (rc3h1b)
Ubiquitin system [BR:
manu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129442648 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
129442648
NCBI-ProteinID:
XP_073710273
LinkDB
All DBs
Position
2:34657064..34672926
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AA seq
1090 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVPKQQPVALITCPEDTKHYEEARQCVEELALYLKPLSNARGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWDQLEKGLVAVKTVVHGLVDFIQNHSKKGADTQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPCTPGLLPEDVVSLDPGRKSLTN
GIGGPLPQLIPRGTDPSNYELLLKPKMDATSLSAPGSPPDSAEHLPMSKQLPVVSRGAPQ
MYPQQQPELFYSEPPRHQTSGSQYDAQYPPGNPYPYQPPQYVSPRYIRNPPPPGESAVSP
YPEPYPGYGPDRQYQSHHSGPPFSTHPYAPPSHYSRRHGHYPAPPPQFAPPRDDLVRMSP
VPLDVPPASMPPPQGGAPGSLYHPQESSSRDRYPQDGYYPTGPHPSQMRSHMRDPYSRSQ
PSLDDLHRRRKELLVQLEERKVISPPPFAASPTLPTHPFPNDYPQEYLEDGSKSFGSREP
EYAGQYSPWSCDTIGSYIGSKDAKPKDIGSAVQMMNAEGKVLREPPLDSQRRSAEAKDDD
PIIPFGPLPTVSPFGAISRTSKTGYQTTGPIQAMASSQASSSKHMTMTADYSYGNHSGWG
GASYAPHQSMNTQGHFSERMPVSGPDREQLKIELQQVNQQISQQTRGMEAASNSMLLQRE
ACALASQPAAPVKWSTGAVVSSEQLNLELHHVEREIGKRTREIAMENQVAHEYKMKATEN
GQPDHKAQLEELSLALGEVSNGSSGMKPASGVGGSMLSLTNKTSSLTLCSADQSASSSDL
QKNGVVHSCS
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagagtttttactgtgccccatatgcacccaaacg
ttcgaggagacggtgcgtcgacccatcagtctaggttgcggccacaccgtttgcaaaatg
tgcctgaacaagctgcaccgcaaggcctgtcccttcgaccagacggccatcaacactgac
attgagcagttgcccgtcaactctgccctgttacagctggtcggtggtcaggtgcccaaa
cagcaacctgtggcactcattacctgtccagaggacaccaagcattatgaggaggcacgg
cagtgtgtggaggagcttgccctctacctcaaacccctcagcaatgcacgaggggtgggg
ttaagcaatgctgctcagagcatgctgagccgcccaatgcagaggaagctggtgactctg
gtgcactgtcagctggtggaagaggaaggtagggtcagggccatgcgggcggcccgttct
ctgggtgaaagaactgttacagagctcatcctgcagcaccaaaacccccagcagctctca
tccaacctgtgggctgctgtcagagccagaggctgccagttcctgggtccagctatgcag
gaagaggcactaaagctggtactgttggccttggaagatggatctgctctttccaggaaa
gttctggtcctgtttgtggtccagagacttgaaccaaggtttcctcaggcctctaaaacc
agtattggacatgtagttcagctcctctatcgtgcctcatgcttcaaggtgacaaagcga
gacgaggactcgtcactaatgcaattaaaagaggagttccgcacatatgaggcactgcgg
cgggagcacgactctcagattgttcagatcgccatggagggaggcctacgcatcgccccc
gatcagtggtcctctctgctttatggagatcagtcccacaagtcccacatgcaatctatt
attgacaagctgcaaacgccagcatcgtttgctcagagcgtacaggagctgaccattgca
ctgcagaggacgggtgaccccgccaacctcaaccgactaagacctcacctcgagctgctc
gctaacatcgaccccagtccggatgctcctcctcctacttgggatcagctagagaagggg
ctggtagcagtaaagacggtggtgcatgggctggtggatttcatccagaaccacagtaag
aagggtgctgacacgcagcagccaccccagcacagcaagtataaaacatacatgtgcaga
gacatgaagcagaaaggaggctgtcccagaggagccagctgcacctttgcccactctcag
gaggagctggaaaaataccgtaaaatgaacaaacgtcttgccgcacggttgccctgcact
cctggtctgcttcctgaagatgtggtttcattagaccccggacggaagtcccttaccaat
ggaattggtggtcctcttccccagctcatccccagaggcacagatccctctaattatgaa
ctcttactcaaacccaagatggatgccactagcctcagcgctcctgggtcaccacctgac
tcggcagagcacttacccatgtctaagcagttgccagttgtgtccagaggtgctccacag
atgtatcctcaacaacagcctgagcttttctactcggagccacctagacatcaaacctca
ggatctcagtatgatgctcaatatccaccaggcaacccctacccataccagcctccgcag
tatgtatctccccgttacatccgtaacccacctccacctggcgagtcagcagtgtccccc
tacccagagccctaccctggttacggcccagaccgccaatatcagagccaccattccggt
cctcctttctcaacccacccctacgcacctccctctcattacagccgcagacatggacat
tatcctgcacccccacctcaatttgcacctccccgagatgacttggtgaggatgagccct
gttcctttggatgttcctccagcctctatgcctccacctcaaggaggggccccaggatct
ctgtaccacccccaggagtcttcatcacgcgacagatacccacaagatgggtactatccc
actggaccacaccccagccaaatgagatcccacatgagagacccgtacagtcgttctcag
cccagtctggatgatttgcaccgcaggcgtaaggagctgctggtccagctggaggagaga
aaagtcatctctcccccacccttcgctgcctccccaactctccccacacaccctttcccc
aacgactaccctcaggagtatttagaagatggctcaaaatcctttggaagtcgagagcca
gagtacgctgggcagtattccccctggtcatgtgatacaataggatcatacattggctcc
aaggatgctaaaccaaaagatatcggtagcgctgtgcagatgatgaacgcagagggaaag
gttctgcgcgagcctccgctagacagccagcgacgctccgcagaagccaaagatgacgat
cccatcattcctttcggccctttgcccacagtttccccctttggtgccatttcgcgcaca
tctaaaacgggttatcagaccactgggccaatacaggccatggcttcttcacaggcctcc
agctccaaacatatgacaatgacagccgactattcgtatggaaaccacagcgggtggggc
ggagcgtcgtacgccccgcaccagagcatgaacactcagggacacttcagcgagcgtatg
cccgtgtctggccctgaccgcgagcagctcaagatcgagctccagcaagtcaaccaacag
ataagtcagcagacccgtggcatggaggctgccagtaactccatgctcctgcagagggag
gcgtgtgcattggcgtcccagccagcggcaccggtgaaatggtctacaggtgccgtggtg
tccagtgagcagctcaacctggaattgcatcatgtggagcgagagatcggaaagaggacc
cgtgaaatcgccatggagaatcaggtggcacatgaatacaaaatgaaggccactgagaat
gggcagcctgaccataaagcccagctggaggaactctctttagcactgggtgaggtgtct
aatggatccagtggcatgaagccagccagtggggtgggtggatctatgctgtcgctgacc
aataagacgtcttctctcaccctctgctctgctgaccaatcagcaagtagctcagacctt
cagaagaatggtgttgttcactcttgctcttaa
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integrated database retrieval system
