Misgurnus anguillicaudatus (oriental weatherfish): 129443000
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Entry
129443000 CDS
T09481
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03030
DNA replication
manu03410
Base excision repair
manu03420
Nucleotide excision repair
manu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129443000 (lig1)
03410 Base excision repair
129443000 (lig1)
03420 Nucleotide excision repair
129443000 (lig1)
03430 Mismatch repair
129443000 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
manu03032
]
129443000 (lig1)
03400 DNA repair and recombination proteins [BR:
manu03400
]
129443000 (lig1)
Enzymes [BR:
manu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129443000 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
129443000 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
129443000 (lig1)
DNA replication proteins [BR:
manu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129443000 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129443000 (lig1)
DNA repair and recombination proteins [BR:
manu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129443000 (lig1)
NER (nucleotide excision repair)
Other NER factors
129443000 (lig1)
MMR (mismatch excision repair)
Other MMR factors
129443000 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
129443000
NCBI-ProteinID:
XP_073712238
LinkDB
All DBs
Position
2:complement(43786862..43810709)
Genome browser
AA seq
1052 aa
AA seq
DB search
MQRSIASFFQPKKGNEKNDGQLKAKSEPVKSPLKIQNGVKESDSPVKKVNKRSRPIIDSD
DEDQPMVKEQVTKHNEAQAVKPEKAVSAPVSPKPPMTPSTPVTSNNSVGMVTPASSGTPG
TPATPTSTSPSGIPKRKTARKQFPKRKLESRSDGEGTKEDEKGVEEGHESKRARVEDSPG
QTGNENEMMEVEEKSGDEKPMVEDQKEEDEPKKSADIDMHDNGKMNEKTSEKNDKPEKKL
NGASKKKEKEDEKEEDVGKVVKKEKKKVENVDEKKDKSSPERVVKKEKKKVENVDDKKKD
VSSPERVEKKEKKTEEKVDLKKKDVSSPERVEKKEKKTEEKEGSAKKKPISSFFAPRKAA
VKLEKEEQKEGEKKKAGETPAIFEQKDKKSEKGVESADQSQYDPSRANYHPIDHACWMRG
QKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVILLSPDDLLCCVYLCLNQLGPAYQG
LELGIGETILMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPASLTASGV
FNKLKEIANMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAALS
QAVCLTPPGQEFPPAVLDAGKGMSTDSRRAWLEEKALILKQTYCEMPNYDAILPVLLKEG
IDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEATFTCEYKYDGERAQIHILENGEV
RIFSRNQEDNTSKYPDIISRIPQVKKASVRSCVLDSEAVAWDREKKQIQPFQVLTTRKRK
DVDASEIKVQVCVYAFDLLYLNGESLVREPLSKRRALLRESFEEKEGEFVFAKSLDSDNT
ECIAEFLEQSVRDSCEGLMVKTLDKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGA
YLGKGKRAGSYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYY
RVDQSAEPDVWLEAVQVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRFLRIRDDKKP
EDATTGSQIADLYKKQQQIQNQGDKPDLEDYY
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatagcgtccttctttcagccgaagaaaggcaatgagaagaatgatgga
cagctcaaagcaaagtctgaacctgttaaaagtcctctcaaaattcagaatggcgtaaag
gaaagcgattcacctgtgaagaaggttaacaagcgcagcagaccaattatagacagcgat
gatgaagatcagccaatggttaaagagcaggtcaccaagcacaatgaagcccaagcagta
aagcctgagaaggctgtgtccgctcctgtgtctccaaaaccccccatgaccccatcaaca
cctgtcacttcaaataactcggttggcatggtaacccccgcttcctcaggtactccagga
acaccggcgactccgacatcaacatcaccgtcaggcattcccaaacgcaaaacagctcgc
aaacagttccccaagagaaaactggaaagcagaagcgatggagaaggaacgaaagaggat
gagaagggggtagaggaaggtcatgagagtaaaagagcacgagtagaggactcacctggt
cagacagggaatgagaacgagatgatggaggtggaagagaagagcggagacgaaaagcct
atggtggaggaccagaaagaggaggatgaaccaaaaaaaagtgcagacatagacatgcat
gacaatggcaagatgaatgagaagactagtgaaaagaatgataaaccagagaaaaagtta
aatggagcgagtaagaagaaagaaaaggaggatgagaaagaagaggacgtaggcaaagtg
gtgaagaaagagaaaaagaaagtagaaaatgtggatgagaaaaaagacaaaagcagccct
gaaagagtggtgaagaaagagaaaaagaaagtagaaaatgtggatgataaaaagaaggat
gtaagcagccctgaaagagtggagaagaaagagaaaaagacagaagaaaaggtggatttg
aaaaagaaagacgtaagcagccctgaaagagtggagaagaaagagaaaaagacagaagaa
aaggagggatcagccaagaagaaacctatcagcagtttttttgcccctagaaaagcagca
gtgaaactggaaaaagaggagcagaaggagggggagaagaagaaggctggagagacccct
gctatcttcgaacagaaagacaagaaaagtgaaaagggggtggagtctgctgatcagagc
caatatgatccttcaagagcaaattaccatcccattgaccacgcctgctggatgagggga
caaaaggtgccatatttggctgtcgcccgcacctttgagaagatcgaagaagattcaggc
aggttgaggaatatcgaaacactttctaaccttctgcgctctgtaattctgctctcgcca
gatgacctgctgtgttgtgtatacctatgtctgaaccagcttggcccagcgtatcagggt
ctggagctgggcattggtgaaaccatcctgatgaaagctgtcgctcaagcaacagggcga
cagctggacaaaatcaaggcggaagctcaggagaaaggagacctgggattggtcgcagag
agttcacgcagcaaccaaagaatgatgtttgcgccggccagtctgacggcaagtggcgta
tttaacaaactgaaggagattgccaacatgagcgggaactctgcaatgaataagaagatc
gacattattaaaggcctgtttgtggcgtgtcgtttttctgaggcccgctacattgtgagg
tcattggcagggaagctgagaatcggattggctgagcagagcgttctcgcagcgctcagt
caggctgtgtgtctgacgcccccaggccaagagtttccacccgctgtgttggatgctggt
aaaggaatgagtacagacagcaggagagcttggctggaggagaaagcactgatcctgaaa
cagacatactgtgagatgcccaattatgatgccattcttcctgtcttactaaaagaaggc
atagatgaactgcccaatcattgcaagctcaccccaggtgtgcccttgcggcccatgttg
gcccacccaactaaaggggtcggtgaggtaatgaaacgatttgatgaggctactttcacc
tgtgaatataaatatgacggagagcgagctcagatccatattcttgaaaacggggaggtg
cgcatctttagccgaaatcaagaggacaacacgagcaaatacccggatattatctctcgg
ataccacaggtgaaaaaagcaagtgtacgctcctgtgttctagattcagaggcggtggcc
tgggacagagaaaagaaacagattcagccatttcaggttcttaccacacgtaagagaaag
gatgtggacgcgtctgagatcaaggttcaggtgtgtgtctacgcctttgacctgctctac
ctgaacggagagtctctggtacgagagcctctgagcaaacgccgggctctgttacgagag
agttttgaggagaaagagggcgagtttgtcttcgcgaaatccctggactctgacaataca
gaatgtatcgccgaattcctggagcagtctgtacgagattcctgcgagggtttaatggtg
aaaacgctggataaacacgcgacatatgagattgccaaacgctctcacaactggctcaag
ctaaagaaggattatctggagggtgtcggggacactgtagatctgtgtgtgattggagct
tatctgggaaagggaaagagagcaggcagctatggaggatttttactggcctgttacgat
gaggaaaacgaggagttccagtctgtctgcaagattggaacgggctttaaagatgaagat
ctggagcaacattacaatttcttgaaggagcacattttacctaaaccacgtccgtattac
cgcgtggaccaatcggcagaaccggacgtttggctggaggcggtgcaagtgtgggaggtg
aaatgtgctgacctttcactgtcgccggtctacaaagcagccatgggattggtggaccca
gagaaagggatttcgctccgttttccacgattcctcaggatcagagatgacaaaaaacca
gaagatgccaccacaggttcacagattgctgatctctacaagaaacagcaacagattcaa
aatcagggtgacaaacctgacctggaggactactattga
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