Misgurnus anguillicaudatus (oriental weatherfish): 129443210
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Entry
129443210 CDS
T09481
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03013
Nucleocytoplasmic transport
manu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129443210
03015 mRNA surveillance pathway
129443210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129443210
Enzymes [BR:
manu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129443210
5.6.2.5 RNA 5'-3' helicase
129443210
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129443210
mRNA cycle factors
Common to processing body (P body) and stress granule
129443210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
129443210
NCBI-ProteinID:
XP_073720548
LinkDB
All DBs
Position
Unknown
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEESELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGGLPNGEDAVATTVQLLADLNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSLN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPSS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcacagacgctcaccttcctggacacggaggaa
tcggagctgcttggggccgacacgcagggctccgagttcgagtttaccgactttacgctg
cccagtcagacccaaacccagggccagacccagagtcaacttgacaaccaggtgaacgga
cctgatggaggtctgcccaatggagaggatgcagtggcgacgactgtccaactactggct
gatctgaattttgaggaggatgaggaagatacttactacactaaagacctgccggtgcac
gcctgcagctattgcggcatccacgatccagcatgcgtggtctattgcaacaccagcaag
aagtggttttgcaacggtcgtggtaacacctctggcagtcacattgtgaatcatttagtg
agggccaaatgtaaggaggtgaccctgcataaggatggcccgctgggcgagaccgttctg
gagtgttataactgtgggtgtcgtaacgtcttcctgcttggcttcatcccagctaaagcg
gattctgttgtggtccttctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagttctcagtggcagcctctcattcaggaccgatgctttctgtcctgg
cttgtgaagatcccatctgaacaggagcagctgagagctcgtcagatcaccgcccaacag
atcaacaaactcgaggagctctggaaggaaaatccaacagccaccctggaggatctggag
aaacccggagtggatgaagaacctcagcatgttctgctgcgatacgaggacgcctatcag
taccagaacatattcgggccgctcgtcaaactagaggccgattatgacaagaaactcaaa
gagtcccaaactcaagataatataacagtcaggtgggacttggggctgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcagggcgat
gagatctgtctgcgctataaaggagacatggctccactctggaaagggattggacatgtc
atcaaagtccccgacaattatggagacgagatagccatcgagttgcggagcagtgctgga
gcacctgtggaggtgccacacaacttccaggtggactttgtctggaagtccacatctttt
gaccgaatgcagagcgccctcaagacgtttgctgtggacgagacgtctgtgtctggctat
atctaccacaagctgctgggtcatgaggtggaggatgtgatcatcaaatgccagctgcct
aaacgtttcactgcacagggcctgccagacctcaatcattcacaggtttacgcagtgaag
accgttctgcagagacctctcagtctgatccaaggacctccaggaactggcaagaccgtg
acctcggccaccatcgtctaccatctggccagacagggcaacggcccagtgcttgtatgt
gctccgagtaacatcgcagtggaccagctaacagagaagatccatcagacggggttgaag
gtggtgcgtttgtgtgctaagagtcgcgaggccatagactcgcccgtgtctttcctggct
ctgcacaaccagatccgcaatatggacagcatgccagagttgcagaaactccagcagctg
aaggatgagaccggcgagctgtcgtcatcagatgagaaacgataccgagctctcaaacga
actgctgaaagagaactgctcatgaatgcagatgtgatctgttgcacgtgtgttggagcg
ggtgatcctcgtctggctaagatgcagttccgctccattctcatcgatgagagcacccag
gccacagagcccgagtgcatggtaccagtggtactcggggctaaacagctgattctggtt
ggtgatcactgtcagcttggtcctgtggtcatgtgtaagaaagcagctaaagcgggtctg
tctcagtccctgttcgagaggctggtggttttgggcatcagacccatccgtctgcaggtg
cagtatcgcatgcatccgtcgctcagtgctttcccttccaacatcttctatgagggatcg
ctgcagaacggagtcactgccgctgatcgaatcaagaaaggctttgatttccagtggcct
cagccagataagcccatgttcttctacgtgactcagggtcaggaggagattgctagctct
ggcacgtcctacctcaacaggactgaagcagctaatgtggagaagatcaccacgcgtctg
ctgaaggccggagccaaaccggaccagatcggcatcatcacgccgtatgagggccagcgc
tcgtaccttgtgcagtacatgcagttcagcggctcactccacaccaaactctaccaggag
gtggagattgccagcgttgacgccttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaatgaacatcagggaattggtttccttaatgatccacggcgtctcaat
gtggcactaaccagagccaggtacggtgtgatcattgtgggaaatcctaaggctctctcc
aaacagcctctctggaatcatctgctgaactattataaagagcagaaggttctagtggag
gggccgctcaacaatctgagagagagtctcatgcagttcagtaaaccacgcaagcttgtc
aacaccatcaaccctggtgcccggttcatgagtactgccatgtatgatgcaagagaggcc
atgattcctggatcggtgtatgaccgcagtagcactggacgtccgtctaatatgtacttc
cagacccacgaccaggttggaatgatcggaaccgggccaaacccaatgggttccctgaac
atccctatcccgttcaaccttgtcatgccacccatgcctccgcccgggtacctgggccag
gtgaatggaccggctgcaggacgtggtgcacctaaaggcaagaccggaggtcgtggaggt
cgtcagagaaaccggggcacaggtaaccacgggagcgggcaggccaacatgccgagcagt
caggcgagtcaggatctggtatcacagccgttctctcagggtcctctgacccagggttac
atcactatgagccaaccttcacagatgagccagcctggactgtcccagcctgaactctca
caggacagctatctgggtgatgaattcaagtcccagatggatgtggcgctctcccaggat
tccacctatcagggtgaacgggcttaccagcacggaggagtgacgggactctcacagtac
tag
DBGET
integrated database retrieval system
