Misgurnus anguillicaudatus (oriental weatherfish): 129443803
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Entry
129443803 CDS
T09481
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129443803 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129443803 (parn)
Enzymes [BR:
manu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129443803 (parn)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129443803 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
PoNi_N
RRM_1
FMP23
NCBP3
GATA-N
Motif
Other DBs
NCBI-GeneID:
129443803
NCBI-ProteinID:
XP_055059984
LinkDB
All DBs
Position
6:complement(484526..489974)
Genome browser
AA seq
664 aa
AA seq
DB search
MEVTRQNFKEVLPLVCDAIQEADFISIDGEFTGISDGPSVSALTNGLDTPDERYSKLRKH
SMNFLLFQFGLCTFRYDQNQSKYITKTFNFYVFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFRSGIPYLTQEEECQLREQYEERRSQMNGSGPVTYTPPSGMGISHIPEDQRGFI
KMVEEKVEDLLKNSEKSLDLEPCTGFQRKLIYQTLNSKYSKGLHVETLETDKKERFIQIS
KVDDEERRRREQQKHQREQEELNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCG
PLPEELDDFKDVTMSVFPRLLDTKLMASTQPFKEIISNTSLAELHKQLKAKPFKAPTTDC
PDDFQSYDTSTEQLHEAGYDAYITGLCFISMANYLGTFLTPPKSHISARSKLLEPFYNKL
FLMRVIDIPYLNMCGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSAF
VSLSQTEQVQIAVNTSRYAESYRIQTYAEYLQSRQKNTHTNRKWADDGWADTSYSDAAMT
TTSGFSHAHSQHHAVKRSISPSLDEQNCNADSSWTQYCGIKKMKTEGGCSQTHDDISGSE
VTGDWLRQQPDESTACASLNQEEAEPDESSTNQSQGKRNRKHKKRKSDASETSPPVLFDV
PQVW
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaggttacgagacagaattttaaggaggttcttccactggtgtgtgatgctatacaa
gaggcggattttatctctatagatggagaatttacaggaatcagcgatgggccgtcagta
agcgcgctgacaaatggactcgacacaccagatgagagatacagtaaactgaggaagcac
tccatgaatttcctcctcttccagtttggactctgcaccttcagatacgaccagaatcaa
tccaaatacatcactaaaaccttcaacttctacgtcttccctaaaccctttaaccggaca
tctcctgacatcaagttcatctgtcagagttccagcattgatttcttggccagtcagggt
tttgacttcaacaaagtcttccgaagcgggatcccgtatctgacgcaggaggaggagtgt
cagctgagggagcagtatgaagagaggcggagtcagatgaatggctctggtccggtcacg
tacacgcccccttctgggatggggatcagtcacatccctgaagaccagagaggatttatt
aagatggtggaagagaaagttgaagatcttctgaagaactctgagaaatctctggacctg
gagccctgcacaggctttcagaggaaactcatctatcagactcttaactcaaaatattct
aaaggacttcatgtggagacactcgagaccgacaagaaagagcgattcattcagatcagt
aaggtggatgatgaggagagaaggagaagagaacaacagaaacaccagagagagcaggaa
gagctgaatgatgctgtaggtttctctcgagttattcgagcgatctcaaagtctggtaag
ctggttgttggacacaacatgttgctggatgtcatgcacactatccatcagttctgtggg
ccgctgcctgaggagctggatgattttaaagacgtgaccatgtctgtgtttcccagactg
ttagacactaagctgatggcgtccacacagccctttaaggagatcatcagcaacacatct
ctggcagagctacacaaacagctgaaagctaaaccgtttaaagcgcccacaactgattgt
cctgatgactttcagagttatgacacatcaacagaacagcttcatgaagccggatatgac
gcgtatatcactggattgtgtttcatctctatggcaaactatctgggtactttcctcact
cctcctaagagtcacatctctgcccgctccaaactccttgaacccttctacaacaaattg
ttcttgatgagggtgattgacattccttacctgaacatgtgtggaccagacttgcagcct
aaaagagatcacgttctctacgtcacattccctaaagaatggaaaaccagtgacctttac
caactcttcagtgctttcggtaacatccaggtgtcatggattgatgatacatcagctttc
gtttctctcagccagacagaacaggtccagatagccgtgaacacgagccgttacgcagag
agttatcgtatccagacgtatgcagagtatttacagtccagacagaaaaacacgcacacc
aacaggaagtgggctgacgacgggtgggcggacacttcctacagtgatgctgccatgacg
acaacctctggcttcagccacgctcacagccaacatcatgcagtgaagagaagcatcagt
ccgtctctggatgaacagaactgtaatgctgacagcagctggactcaatactgcggtata
aagaagatgaaaaccgaaggaggctgttcacaaacgcatgatgacatcagcgggtctgaa
gtgacaggagattggctgagacagcagccagatgaaagcacagcgtgtgcaagcctgaat
caggaggaggcggagccagacgagtcctcaaccaatcaaagtcaaggtaaacggaaccgc
aagcacaaaaagaggaagtcagacgcttctgagacgtcaccaccggtgctctttgatgtt
cctcaggtttggtag
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