Misgurnus anguillicaudatus (oriental weatherfish): 129444037
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Entry
129444037 CDS
T09481
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129444037 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129444037 (patl1)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129444037 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
129444037 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
CARD
Motif
Other DBs
NCBI-GeneID:
129444037
NCBI-ProteinID:
XP_055060357
LinkDB
All DBs
Position
3:7555733..7566669
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AA seq
785 aa
AA seq
DB search
MQTFQLQCHCVNILNSHDIYYDVGRPAESLDDDCTLEEEGLVEEEDEIDQFNDDTFGAGA
IDDDWQEEHTRLAELDAQVRDVQEGASDAPIELPPACSTTQSSIVPPPSSSRQYSDIDER
AGGDLAESLSRFILGSDPAIAGVGTASSDRSHLPPILSGQSHSSALAGQSPMLLGYHQPH
HQLLHRGSAPLSQINSHNIWENNMGFSPGLVNKPEDGSLMSIIKAVGLPKQPPALGREEG
RDFSERVPPPRSSSPVIGSPPVRAVPIGTPPKQPMSQMLNQQNNHPSAVHIRASMPLRYP
PPFPERLSPNNLLSIANSQLSHHSFPGVNHMLSQIQRQQLLNPQVGQFQRGPVPPLLQGG
IGGFRPFFGQSGPRLGPHGPPLGHPPIIRHNTTHLHPQHRRMLSQRMQNRGSGDHLGGRG
VLERKNRDPYSNLMTQREKEWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNK
KEHATKLITPQVAKLEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQ
VWNKRRQILYTVEKMYSLLLEVQDFEKKFLQTPEHQRDALLEQHKTHTLQLYSSLREKEW
ADRVSDEQCLMIMSVRKGKRLISRLLPFLPQPQAAAVVMAIARNLPALAKKDRHDQVLCW
LVEPVAVVIQSMSSTSLTDLLQELQGSEGQLPLVLQNKFGVTLLYVVLSEGERMQSSDPN
CQLMDDNRWTELVFSVTRELLKVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQI
TALSR
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacgtttcagcttcagtgtcattgcgtgaatatcttaaattcacatgatatatat
tatgatgttggcaggccagctgagtccttggatgatgactgcaccctggaggaggaaggg
ttggtagaggaagaagatgaaattgaccagttcaatgatgacacttttggtgcaggagca
atcgatgatgattggcaggaagagcacacccgccttgcagaacttgatgcgcaagtgcga
gacgtacaagaaggagccagcgatgccccaattgagcttcctcctgcttgtagcaccacc
caatcttccatcgtccctccgccctcctcctctcgccagtactctgacatagatgaacgg
gcagggggtgacctagcagagtcgctgagtcgtttcatcttgggatcggatccagccatt
gccggagtgggcacggccagctcggaccgatctcaccttcctcctattctctccggtcag
agtcattcctctgcgttagcaggacagtctcctatgctgctgggctatcatcaaccacat
catcagctcctgcacaggggctcggctcctctttcacagataaactctcacaatatttgg
gagaataatatgggcttcagtccaggacttgttaataaacctgaggatggttcgcttatg
tctattatcaaagcggttggccttccaaagcaacctcctgccctgggcagagaggagggg
cgggacttttcagaaagggttccgcctcctcgctcctcctcacccgtgattggcagtcca
cctgtaagggctgtgcctataggaacccctccaaagcagcccatgagtcaaatgctcaat
cagcagaataatcatccttcagcagttcatataagagcctccatgccgctccgttacccc
cctcctttccctgagcgcctgtctcctaacaacctcctaagcatcgctaattcacagttg
tctcatcattcattccctggtgttaatcatatgctttctcagatacagagacaacagctg
ctcaaccctcaggttggccaattccagcgcggtccagttcctccgttattacagggtggc
attggaggtttcagaccattctttgggcaatctggccccagattgggtccccatggccca
cccctcggccacccccctattatcagacacaacaccacacacctccacccgcagcatcgc
aggatgctaagccagaggatgcagaacagaggctcaggtgatcaccttgggggcagaggg
gttttggaaaggaaaaacagagacccctacagcaatctgatgacccagagagagaaagaa
tgggtcgctcgaatccagatgatgcagctacagagcactgacccttatctggatgactac
tattaccagaattactatgagaagatggagaaacgtcaggagcgggacagggacaataaa
aaggaacacgccaccaaactcatcactcctcaggtggccaagctggagcacacctatcga
ccagtacagtttgctggctcattgggtaaactcacagtctcaagtgtgaacaatcccagg
aaaatgattgatgccgtagtgaccacccgcagcgacgatgaggagaaacgagagaaacag
gtttggaataaaagacggcaaatcctttacactgtggagaagatgtacagtcttctgctc
gaggtgcaggactttgaaaagaagtttttgcaaacccccgaacaccaaagagacgccctg
cttgaacaacacaaaactcacacgctgcaactctacagctcgctgcgagagaaagagtgg
gccgaccgggtgagcgacgagcagtgtttaatgatcatgtctgtgcgcaaagggaagcgg
ctcatctccaggctccttcccttcctgccacagccgcaggctgctgcggtcgtcatggca
attgccaggaaccttccagccctggctaagaaagaccggcatgaccaggtactgtgttgg
ttggtggaaccagtagccgtggtgatccagtccatgtcgagtacgtctctcactgatctc
cttcaagagcttcagggcagtgaaggacaacttcctctggtgctgcaaaataagtttggc
gtgacgctcctctatgtggtactgagtgaaggcgagaggatgcagagctctgatcccaac
tgtcagctcatggacgataaccgctggacggaattggtgttctcagtgaccagagagctt
ctgaaggtcccatcgtctgctctctcatcgcctctgttcacccctccaaaccttgtgtcg
ttgttctctcgatatgtggatcggcagagactggagctccttcaggagaagctacagatc
acggccctgtccaggtag
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