Misgurnus anguillicaudatus (oriental weatherfish): 129444139
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Entry
129444139 CDS
T09481
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
manu03009
]
129444139 (pdcd11)
Ribosome biogenesis [BR:
manu03009
]
Eukaryotic type
90S particles
Other 90S particles
129444139 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
OB_RRP5_4th
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Suf
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
OB_RRP5
ARM_TT21
DUF2110
PPR
Mad3_BUB1_I
RPN7
Wzy_C_2
Motif
Other DBs
NCBI-GeneID:
129444139
NCBI-ProteinID:
XP_055060530
LinkDB
All DBs
Position
6:complement(10465102..10485975)
Genome browser
AA seq
1814 aa
AA seq
DB search
MESMEEDFPRGGTQKTQVDKPVKSHEVDNLFQSHEPEVKKKRKTAKHDDGKDVKRQKVDA
GGLMLNTATSVEILHLRNLKVGTLLLGCVREVLDLEVVVGLPSGLVGYLPIHNICDTYTK
ILVDKLDSEHSLEEVVALSELVAPGTLVRCVVSSLESPVDGHISLKLSINPKEINKGLSA
GALKPGMTLSGCVESVEDHGFLVDIGISGTKAFLPKKSTFSKQDLKVGQYVLSLLEEVKN
EGRVVRLSLDPKALGKAIAGTQHGWTLDSLLPGLLIRVRIKKVTPHGLLVEYLSSFSGVV
DFLHIDQDKAASYKVGDEVLARVLYVEPSNRLVSLSLRSHLLPPGGITLDNFSSERVGEV
VEGCRMTAVHHHSGALMEMPDNTMAFAHKNQMKEPKEEFNPNRLLAKPKHALRITDYSPM
EQMHMVSLRKSTIEVSFFRYQDIKVGQIVEGTVISLQKYGMFVRITDHLKGMIPSIHLAD
VTLKNPEKKFHEGMKVKCRVLTVDATTKRLHLTNKKALVESTLPIFKSYSDAKLGRVSHG
YIVCVKKFGCIVHFYGEVKGLVPVRELSTELVANPEDLFFVGQVVQAKVLNCDVANEKLL
LSFKAVTEGDVKEAQTAKFDFEVGKMVDVRVRHKVLDGLEVSILPEGTPAFLPTVHLSDH
VTNCMNLWEALEEGDDISNAVCLNKSTKGVILTKKPSIKACLEDGGVPKAFSELHVGLQM
VGWVKNVMTYGVFISFPHGLFGLAPKAAMGEQFIKDTSEIFAIGQTVVAKVTNLDEEKKR
FLVSLKVSELIPEDDAQDRLIQGQKERRAIAEMVTGRGESDLLQQLASVSVGDKMKMVVE
DTREDGSVTLTSDQLSEATVLAPKYHTTGVNVTPGFKLTAVVLHVNPLKSQVIVSLLPKL
TAKRKTLRQGSELAATIQYIDEDFAVISLDDTGHLTVIPTKTHLNDFINLESKKYSVGFC
LNVTVEDPGCEELGGLPLVVCKGQDEHAKSKGKGSAQAHSLGAVVTAKVTKVKPLAVLVT
LPTGITGSIHVSEIEESPSVGSFPTSSLRVGTEVQARVIGGHAVRGHRFLPVTHSSFKSA
LPELTLLPSKLKNAGTQTVDKVKNYKPGDEIICFPSKYNSQSKCLEVQVKPNILGTVELL
AMISKPGQVKHPQKLFKPGEAVSAKVVGNNPHRSGQLSLSLTGTCKLEQGSVVMGMVWKV
EPDKGLFVKLPFGNSGFASLMDLSDAYADNPLEAYKEGQVIRCCMIGEEKGHFDVSLRPS
RINKDQQINVKDPEIQSVADIQEGQIIRGYVKTVGDEGIFVRLSRTLDGRVQFQHATKYF
MNDPKIISKYITQNALISAKVLSVNTENVHVLLSLLTEDTGKPDILPESLELPLRLMGEE
KEKHDKNTVKRKRTSSESQQQDKDEQKVKKKKVCVVESVEETTTLKKKGKKKKRKGKTDD
SDSGVEVFFREDDETESSKPSEEKQKRPDCKERLKGLSGFSWDSTLSSLTPAVAGDHAQE
SSDDEQEDQSKTAKKSRKELLQEQQTAEQQLGKLEAELMDPSARPDSAAAFERVLLSSPD
SSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEKLNIWVAMLNLENMYGTEESL
QKVFERAIQYCEPLPVYQQLADIYANSDKIKEAESLYKSMVKRFRQEKAVYQSYGNFLLR
QGQSNAANALLQRALQSLSTKDHVDLITKFARLEFQYGNTERGKSMFEKVLSTYPKRTDL
WSVFIDLTVKHGCQKEVRELFDRVIHLSVSVKKVKFFFKRYLEYEKKNGTPESIQAVKQK
ALEYVESKGAEAAS
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atggagtccatggaggaagatttcccccgaggtggcacacaaaagacacaggtggacaaa
cctgtgaagtcccatgaagtggacaatctctttcagtcacacgaaccagaggttaaaaag
aagagaaagactgcgaaacacgatgatgggaaggatgtaaaaaggcagaaagtggatgca
gggggtttaatgctcaatactgccaccagtgtggaaattcttcatcttcggaatctgaaa
gttggcactctcttgctgggctgtgtaagggaagttttagatttggaggtagttgtgggt
ctgccaagtggccttgttggttaccttccgatccacaacatctgtgacacctacaccaag
atccttgttgacaaactggactctgaacacagtttggaggaagttgtcgccctctctgaa
cttgttgctcctggaactctggtcagatgtgttgtatcttctttagagtcccctgtagac
ggccatattagtcttaaactgtcaatcaacccaaaagagattaacaagggtttgagtgcg
ggcgccttaaaacctggaatgacgctgagcggttgtgtggagagtgtggaagatcacgga
ttcctggttgacatcgggatcagcggcactaaagcattcctgcctaaaaagagcacgttc
tcgaagcaagatctcaaggtgggccagtacgtgttgagcctgcttgaggaagtgaagaac
gaagggcgagtggtgcgcctgtctctggacccaaaggctctcggtaaggctattgctggg
actcagcatggatggacgctggacagtcttctgcctggcctgcttatccgtgtgcgcata
aaaaaggtgactcctcatgggcttcttgtggagtatctgtcatctttcagcggggtcgtt
gattttttgcatattgatcaagacaaagctgctagctacaaagtgggagatgaggtcctg
gcaagggttttgtacgttgagccctccaatcggctcgtcagcctttccctgcgcagccat
ctgctgccaccagggggcatcacactggataacttcagcagcgagcgagtgggtgaggtt
gttgagggctgtaggatgactgccgtacaccatcactctggggcattgatggagatgccc
gacaatacaatggcctttgcgcataaaaaccaaatgaaggagcctaaagaagaattcaac
ccaaatcgtttgctggctaagcccaaacatgctctgagaatcacagattacagcccaatg
gagcaaatgcacatggtttcactacgcaagagcaccattgaagtatcattcttcagatac
caagacattaaagtggggcaaattgttgagggcacagttattagtttgcagaaatacggc
atgtttgtgaggattacggaccacctcaaaggaatgataccctcgattcaccttgccgac
gttactctaaaaaacccagagaaaaagtttcacgagggcatgaaagtcaagtgcagggtc
ttaaccgtggatgcaactactaagcgactgcacctaacaaacaaaaaggccctggtggag
tccacgctccccatctttaaatcctactctgacgcgaaattgggccgcgtctctcatggt
tacattgtgtgcgtgaaaaagttcggctgcattgtgcatttttacggagaagtgaagggc
ttggtgcctgtgagggaactgtccacagagcttgtggctaatccagaagatctattcttt
gtcggtcaggtcgtccaagccaaagttttaaattgtgatgtagcaaacgagaaactgctc
ttatccttcaaggccgtaactgagggcgatgtaaaggaggcacagacggcaaagtttgat
tttgaagtcggaaagatggttgatgtaagagtgcgccacaaagtcctggatggcctcgaa
gtctccattctacccgaagggacgccggcttttctacccacggtgcatctctctgatcac
gtgaccaactgcatgaatttgtgggaagcgctggaggagggggacgacatctccaatgca
gtgtgcctcaacaagtcaacaaagggtgttatccttaccaagaaaccttcaataaaggcc
tgtctggaggatggaggcgttcctaaagcattctcagagctgcatgtgggtttgcagatg
gtgggttgggtgaagaacgtcatgacttacggagtcttcatcagctttcctcacggtctc
ttcggcctcgcccccaaagctgccatgggtgagcagtttatcaaggacacctctgaaatc
ttcgccattggacagacggtggtcgctaaggtgaccaatctggatgaggagaagaaaagg
tttctggtcagtcttaaggtgtcagaattaattcctgaagatgacgcccaagacagactg
atccagggccagaaggaaaggagggccatagctgagatggtgacaggcagaggtgaatct
gacctccttcagcagcttgcatctgtgtcagtcggagataaaatgaagatggtcgtggaa
gataccagagaagacggctcggtcacactgacctcagatcagctcagtgaagccaccgta
ttggcacccaaatatcacacaacaggagtgaatgtgactccaggtttcaagctcacggct
gttgtgcttcacgtcaaccctttgaaatctcaggtcattgtgtcgctgttgccaaagttg
accgcaaagagaaaaactctgcgtcaaggctcggagctcgctgccacaatccagtacatt
gacgaagacttcgccgtcatctcattggatgataccggtcacctgaccgtcatccccacc
aagactcacttaaacgacttcatcaacttggaatcaaagaagtactcggtcggtttctgt
ctgaatgtgaccgtggaggacccgggctgtgaggagttgggagggcttcctctcgtagtg
tgcaaaggccaggacgagcacgccaaatcgaagggcaaaggctcagcacaagcccacagt
cttggggcggtggtgactgctaaagtcacgaaggtgaaacccctggctgtactcgtgacg
ttgccgacagggatcacaggaagcatccacgtgtccgagatagaggagtcgccttcggtc
ggcagctttcccacatcatccctgagggtcgggacggaggtccaagccagggtgattgga
ggacacgcagttcgcggtcacaggtttttgccagtgactcattccagttttaagtccgcc
cttcctgaacttacacttttgccaagtaaactaaaaaatgcgggcacacaaacagtggac
aaagtgaaaaactacaaacctggcgatgagatcatatgcttcccttcaaagtacaactca
caatcgaaatgcttggaagttcaagtcaagcccaacatcctggggacagttgagctgttg
gctatgattagcaaacctgggcaagttaaacacccacagaagctctttaaacccggagag
gccgtttcagcaaaggtggttggaaataaccctcacaggagcggtcagctttccctgtca
ctcacagggacgtgcaagctggagcaaggatcggtcgtcatggggatggtttggaaagtc
gagcctgacaagggactgtttgtcaaacttccgtttgggaattcggggtttgcgtctttg
atggatctctctgacgcatacgcagacaacccgctggaggcttacaaagagggacaagtt
atccggtgctgtatgatcggggaagaaaaggggcatttcgatgtttcactacgtccttct
agaataaataaggaccagcaaatcaatgttaaagacccggaaattcaatctgttgctgac
atacaagagggtcagattatcagaggatatgtgaaaaccgttggggatgaaggcatattt
gtgaggttatccaggacccttgacggaagagtacagttccaacacgctacaaaatacttc
atgaacgatcctaaaataatttccaaatacattacccagaatgcattgatatccgccaag
gttctcagtgtgaacacggagaacgtccacgtactcctctcacttctcacagaggacact
gggaaaccagatattctcccagaatccctcgagctgccactgcgtctgatgggggaggag
aaggaaaaacacgacaaaaatacagtcaagaggaagcgcacttcctctgagagccagcaa
caagataaagatgaacaaaaggtaaaaaagaaaaaggtttgtgtggtggaaagtgtggaa
gagaccaccactttgaaaaagaagggaaaaaagaagaaaaggaaagggaagacggatgac
agtgacagcggtgtcgaggtgttcttcagagaagatgacgaaaccgagtccagtaaaccg
tctgaggagaaacagaagagacctgactgcaaggaacggctgaagggattatctggtttc
tcctgggactccacgttgagctctttaacacctgcagtcgcgggagaccatgcccaggag
tccagtgatgatgagcaagaagaccaaagcaagaccgcgaagaagtcccgtaaagaactt
ctgcaggagcagcagaccgcggagcagcaactcggcaagctggaggcggagcttatggat
ccgtcggcacgtccggacagcgcggctgcgttcgagcgggtgctcctctcatccccagac
agctcgctcctctggctgcagtacatggcttttcatctgcaggccacgcagatcgagcag
gcacgagccgtcgcggagagagcccttaaaaccatctccttcagagaggagcaggagaag
ctgaacatatgggtggccatgctgaatctggagaacatgtacggcacagaggagagtttg
cagaaggttttcgaacgggccattcagtactgcgaacccctgccggtgtaccagcagctg
gccgacatttatgccaattcggacaagatcaaagaagcggagagtctttataaaagcatg
gtgaagcgcttcaggcaagagaaagccgtgtatcagagttacggcaactttctgctgcgc
cagggccagagcaatgctgccaatgccctcctccagagggcgctacagagcctgtccacc
aaagaccatgtcgacttaatcaccaaatttgcacgcctggagtttcagtatgggaatact
gagagaggcaaatccatgttcgaaaaagtcctcagtacctaccccaagcgcaccgacctg
tggtcagtgtttatagatctgacggtgaagcatggctgtcaaaaggaagtgagagagctt
ttcgatcgcgtgattcacctgagcgtgtcggtgaagaaggtcaagttcttctttaagcgt
tacctggagtacgagaagaaaaacggcacacctgagagcatccaggcggtcaaacagaaa
gctctagaatatgtggagagtaaaggagcagaagccgccagctaa
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